Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 4.7e-177 624.4 310 100.0
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.8e-173 612.5 310 98.1
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.7e-134 483.0 303 78.2
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.8e-134 481.9 300 79.3
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.9e-134 481.5 301 79.4
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 4.2e-133 478.4 305 78.7
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.2e-132 476.9 300 79.0
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.6e-129 466.5 293 78.8
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.8e-129 465.7 297 78.5
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.6e-129 465.3 306 77.8
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 8.1e-129 464.2 304 77.3
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 8.1e-129 464.2 289 79.2
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 6.9e-128 461.1 302 74.8
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 9.0e-128 460.7 298 77.5
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 2.0e-127 459.5 279 79.9
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 4.5e-127 458.4 279 80.3
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 5.8e-127 458.0 296 77.0
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 7.6e-127 457.6 298 77.2
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.3e-126 456.8 298 76.8
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.3e-126 456.8 300 75.7
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 6.4e-126 454.5 279 77.4
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.9e-125 453.0 320 72.8
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.2e-125 452.2 297 73.1
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 7.1e-125 451.1 279 78.5
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 4.6e-124 448.4 306 74.5
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.0e-124 448.0 302 74.5
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.3e-123 446.8 300 72.7
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 3.0e-123 445.7 280 77.9
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.1e-123 444.9 269 81.0
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 6.7e-123 444.5 314 73.6
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.9e-122 443.0 269 82.5
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 7.4e-122 441.0 304 72.7
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.3e-121 440.3 278 78.4
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.8e-121 439.1 278 77.3
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 4.8e-121 438.3 278 76.3
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 4.8e-121 438.3 278 77.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 4.8e-121 438.3 316 71.8
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 6.2e-121 438.0 294 72.1
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 8.1e-121 437.6 304 74.0
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.4e-120 436.8 303 71.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.4e-120 436.8 293 73.4
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.4e-120 436.8 306 71.6
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 6.9e-120 434.5 303 71.0
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 6.9e-120 434.5 312 69.2
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.2e-119 433.7 280 76.4
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.2e-119 433.7 286 73.8
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.5e-119 433.3 291 73.5
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.5e-119 433.3 300 71.7
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.0e-119 433.0 277 78.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 2.0e-119 433.0 278 75.5
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.0e-119 433.0 279 75.3
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.0e-119 433.0 281 75.1
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 3.4e-119 432.2 317 69.7
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 4.5e-119 431.8 279 74.6
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 4.5e-119 431.8 281 74.7
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.8e-119 431.4 269 77.3
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.3e-118 430.3 279 74.2
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.7e-118 429.9 280 76.4
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 2.2e-118 429.5 280 76.8
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 3.8e-118 428.7 350 65.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 3.8e-118 428.7 279 73.8
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 4.9e-118 428.3 312 68.9
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 4.9e-118 428.3 303 71.0
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.6e-116 423.3 280 75.0
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.1e-116 422.9 293 71.7
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 2.7e-116 422.5 289 74.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 2.3e-115 419.5 307 68.1
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 3.9e-115 418.7 307 67.8
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.7e-115 417.9 261 77.8
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.1e-114 417.2 307 67.4
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.9e-114 416.4 307 67.4
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.9e-114 416.4 248 82.3
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 9.6e-114 414.1 264 74.6
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.3e-113 413.7 268 75.0
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.1e-113 412.9 280 72.9
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 4.8e-113 411.8 307 66.1
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 9.0e-112 407.5 265 75.8
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-111 407.1 265 75.8
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 3.4e-111 405.6 265 75.5
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.0e-110 404.1 279 71.3
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.8e-110 402.1 279 71.7
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.5e-109 399.4 263 74.1
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 4.2e-109 398.7 282 71.3
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 5.5e-109 398.3 288 69.8
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 7.1e-109 397.9 263 74.9
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 7.1e-109 397.9 276 72.5
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 9.3e-109 397.5 277 68.6
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.6e-108 396.7 290 70.0
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 4.6e-108 395.2 282 68.4
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-107 393.7 290 69.7
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.3e-107 392.9 309 66.0
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 3.9e-107 392.1 304 66.8
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 8.7e-107 391.0 281 69.4
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 6.3e-105 384.8 281 66.5
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.8e-104 383.3 290 69.0
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.6e-100 369.0 252 73.4
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.0e-99 367.5 279 65.2
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.8e-99 366.7 263 66.9
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 3.9e-99 365.5 264 70.5
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.5e-98 362.8 264 70.5
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 7.4e-98 361.3 271 67.9
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 7.4e-98 361.3 251 72.1
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.2e-95 354.0 265 67.9
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 7.7e-95 351.3 276 62.3
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.3e-94 350.5 239 74.5
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.7e-94 350.1 264 68.2
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 4.2e-93 345.5 262 67.2
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 7.2e-93 344.7 273 64.8
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.2e-92 344.0 249 67.9
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.6e-90 336.3 249 64.7
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.7e-89 333.6 249 68.3
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.4e-87 325.9 272 62.5
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 6.5e-86 321.6 305 58.7
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.1e-85 320.9 233 68.2
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 3.2e-85 319.3 192 80.7
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.1e-84 316.6 203 75.4
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.6e-84 315.8 254 63.0
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.7e-84 315.5 222 75.2
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 5.9e-79 298.5 190 77.9
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.1e-77 294.3 251 61.4
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 4.2e-61 239.2 264 52.7
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 6.1e-60 235.3 256 52.3
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 2.3e-59 233.4 283 44.2
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 5.8e-50 202.2 124 79.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 4.9e-49 199.1 122 77.9
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.8e-47 191.8 131 73.3
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 3.0e-46 189.9 121 75.2
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 8.6e-46 188.3 307 41.4
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 4.3e-45 186.0 267 40.1
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 4.7e-44 182.6 271 39.1
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 2.8e-36 156.8 88 84.1
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-35 154.8 139 59.7
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 8.1e-28 128.6 91 70.3
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 3.1e-27 126.7 83 71.1
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 2.7e-23 113.6 105 58.1
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 5.1e-22 109.4 286 28.3
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.5e-21 107.8 71 69.0
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 4.7e-20 102.8 305 29.5
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 8.1e-20 102.1 265 29.4
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 9.0e-19 98.6 218 30.7
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 9.3e-16 88.6 75 62.7
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 9.3e-16 88.6 207 27.5
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.7e-15 87.0 105 47.6
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 7.8e-15 85.5 152 38.8
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.1e-13 81.6 51 74.5
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.1e-13 81.6 61 62.3
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 3.3e-13 80.1 87 47.1
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 6.2e-12 75.9 319 23.8
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 8.1e-12 75.5 319 23.8
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.4e-11 74.7 47 68.1
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-11 74.7 81 51.9
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.7e-09 67.8 59 61.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 2.9e-09 67.0 41 75.6
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 8.4e-09 65.5 234 23.5
Cre06.g253566 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D138934 4.6e-07 59.7 131 30.5
Cre06.g253851 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145445 4.6e-07 59.7 131 30.5
Cre06.g253900 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146689 2.3e-06 57.4 131 29.8
Cre06.g254002 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D141262 2.3e-06 57.4 131 29.8


User provided reference genes

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