Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 4.0e-179 631.3 325 100.0
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 2.9e-169 598.6 327 94.8
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 2.9e-169 598.6 327 94.8
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 3.5e-114 415.6 329 65.0
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 5.0e-113 411.8 223 96.4
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.4e-110 403.7 327 64.2
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 1.5e-101 373.6 329 59.3
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 1.2e-98 364.0 328 57.9
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 1.1e-96 357.5 333 56.2
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 1.1e-96 357.5 327 57.8
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 1.5e-96 357.1 326 60.1
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 5.6e-96 355.1 329 57.4
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 1.2e-95 354.0 328 56.1
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 1.2e-95 354.0 328 57.3
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 8.0e-95 351.3 327 57.8
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 3.1e-94 349.4 324 59.0
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 5.2e-94 348.6 321 54.8
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 8.9e-94 347.8 331 55.6
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 2.0e-93 346.7 331 58.0
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 2.6e-93 346.3 331 55.6
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 2.6e-93 346.3 336 54.2
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 4.4e-93 345.5 328 54.9
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 4.4e-93 345.5 328 53.4
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 9.8e-93 344.4 329 55.9
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 9.8e-93 344.4 329 55.3
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.2e-92 343.2 336 53.9
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 2.9e-92 342.8 325 56.9
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 4.9e-92 342.0 328 54.0
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 6.4e-92 341.7 328 54.9
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 6.4e-92 341.7 324 56.8
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 8.3e-92 341.3 314 57.6
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 7.0e-91 338.2 321 54.2
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 7.0e-91 338.2 325 55.7
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 7.0e-91 338.2 323 55.1
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 9.2e-91 337.8 325 55.4
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 1.2e-90 337.4 325 55.1
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.2e-90 337.4 336 53.0
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.6e-90 337.0 325 55.4
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.0e-90 336.7 325 55.1
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 2.0e-90 336.7 331 53.8
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 2.7e-90 336.3 325 57.5
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 4.6e-90 335.5 329 55.0
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 6.0e-90 335.1 325 55.1
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 7.8e-90 334.7 331 53.2
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 1.3e-89 334.0 328 53.0
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 2.3e-89 333.2 329 53.8
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 3.0e-89 332.8 329 53.2
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 6.6e-89 331.6 382 49.2
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 1.1e-88 330.9 330 53.9
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 5.6e-88 328.6 332 52.1
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 3.6e-87 325.9 345 49.6
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 4.7e-87 325.5 326 52.8
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 4.7e-87 325.5 328 52.7
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 6.2e-87 325.1 328 52.7
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 8.9e-86 321.2 326 51.5
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 2.2e-84 316.6 331 52.3
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 6.4e-84 315.1 324 52.8
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 8.3e-84 314.7 324 53.4
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 2.4e-83 313.2 328 52.1
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 5.4e-83 312.0 327 51.1
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 3.0e-81 306.2 328 51.2
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 3.9e-81 305.8 319 52.4
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 5.1e-81 305.4 325 50.5
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 1.1e-80 304.3 330 49.4
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 1.1e-80 304.3 327 50.5
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 7.3e-80 301.6 324 50.0
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 1.6e-79 300.4 398 44.0
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 2.1e-79 300.1 330 49.1
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 3.6e-79 299.3 338 50.3
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 1.1e-78 297.7 331 50.8
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 1.8e-78 297.0 329 49.2
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 3.1e-78 296.2 384 45.1
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 1.5e-77 293.9 327 50.2
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 9.9e-77 291.2 323 47.7
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 3.8e-76 289.3 325 47.4
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 4.9e-76 288.9 385 43.4
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 2.4e-75 286.6 331 47.4
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 4.1e-75 285.8 324 46.6
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 1.2e-74 284.3 327 47.7
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 6.0e-74 282.0 327 47.4
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 6.0e-74 282.0 332 47.6
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 6.0e-74 282.0 332 47.6
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 3.0e-73 279.6 326 48.2
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 5.1e-73 278.9 326 47.5
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 5.1e-73 278.9 213 66.7
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 5.1e-73 278.9 325 48.6
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 1.1e-72 277.7 326 48.2
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 1.9e-72 276.9 325 48.0
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 3.3e-72 276.2 324 47.8
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 1.2e-71 274.2 326 46.9
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 1.2e-71 274.2 326 46.9
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 2.8e-71 273.1 326 46.6
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 3.6e-71 272.7 325 47.4
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 4.7e-71 272.3 327 47.7
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 3.1e-70 269.6 325 47.1
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 5.2e-70 268.9 322 46.9
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 8.9e-70 268.1 301 48.8
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 7.1e-67 258.5 327 45.0
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 9.3e-67 258.1 237 55.7
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 3.0e-65 253.1 328 45.1
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 1.9e-64 250.4 213 61.0
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 1.3e-55 221.1 328 38.7
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 4.9e-52 209.1 335 36.4
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 2.2e-36 157.1 328 32.6
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 1.6e-34 151.0 258 34.9
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 2.1e-34 150.6 321 31.5
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 3.6e-34 149.8 228 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 1.4e-17 94.7 164 36.0
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.4e-14 84.7 69 62.3
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 3.1e-14 83.6 278 25.2
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 9.1e-14 82.0 281 24.2
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 1.2e-13 81.6 278 24.5
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 1.2e-13 81.6 259 25.1
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 1.6e-13 81.3 271 23.2
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 5.9e-13 79.3 278 25.5
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 5.9e-13 79.3 271 24.0
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.0e-12 78.6 271 22.1
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 1.7e-12 77.8 273 23.1
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 2.2e-12 77.4 262 26.0
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 2.2e-12 77.4 272 23.5
Lj1g0004015 Lotus japonicus HOM05D004759 ORTHO05D005722 2.2e-12 77.4 256 24.2
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 3.8e-12 76.6 275 24.4
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 5.0e-12 76.3 254 25.2
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 5.0e-12 76.3 277 24.5
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 5.0e-12 76.3 273 22.3
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 6.5e-12 75.9 278 23.0
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 6.5e-12 75.9 271 22.5
Psat5g003440 Pisum sativum HOM05D004759 ORTHO05D005722 6.5e-12 75.9 257 24.9
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 1.1e-11 75.1 261 26.1
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 1.1e-11 75.1 273 23.4
Glyma.06G005900 Glycine max HOM05D004759 ORTHO05D005722 1.1e-11 75.1 253 22.9
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 1.1e-11 75.1 270 22.2
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 1.1e-11 75.1 270 23.7
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.1e-11 75.1 260 24.6
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 1.5e-11 74.7 253 22.5
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 1.9e-11 74.3 273 23.4
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 3.2e-11 73.6 277 23.8
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 3.2e-11 73.6 274 23.7
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 3.2e-11 73.6 276 25.0
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 5.5e-11 72.8 278 23.4
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 5.5e-11 72.8 270 23.3
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 9.4e-11 72.0 256 22.7
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 9.4e-11 72.0 239 26.4
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 1.2e-10 71.6 272 22.4
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.2e-10 71.6 268 22.8
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 1.2e-10 71.6 254 24.0
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 1.6e-10 71.2 275 22.2
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.6e-10 71.2 138 34.8
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 2.1e-10 70.9 276 22.8
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 2.1e-10 70.9 272 22.4
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 3.6e-10 70.1 308 23.1
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 6.1e-10 69.3 310 22.6
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 8.0e-10 68.9 259 24.3
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 8.0e-10 68.9 272 22.4
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 8.0e-10 68.9 260 24.2
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 1.4e-09 68.2 252 20.6
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 4.0e-09 66.6 87 44.8
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 5.2e-09 66.2 282 23.8
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 5.2e-09 66.2 273 22.3
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 8.8e-09 65.5 277 22.0
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 8.8e-09 65.5 224 22.8
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 1.5e-08 64.7 271 21.4
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 2.0e-08 64.3 277 22.0
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 2.0e-08 64.3 224 22.8
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 7.5e-08 62.4 277 23.1
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 7.5e-08 62.4 277 23.1
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 7.5e-08 62.4 277 20.9
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.3e-07 61.6 272 22.8
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 2.8e-07 60.5 238 19.7
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 3.7e-07 60.1 255 20.8
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 4.8e-07 59.7 226 22.1
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 6.3e-07 59.3 276 22.5
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 6.3e-07 59.3 276 22.5
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 8.2e-07 58.9 254 20.5
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 1.4e-06 58.2 271 20.7
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 2.4e-06 57.4 225 25.8
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 4.1e-06 56.6 224 25.0
unitig_61.g26436 Utricularia gibba HOM05D001532 ORTHO05D001402 4.1e-06 56.6 112 29.5
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 5.3e-06 56.2 238 21.4
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 9.1e-06 55.5 224 22.3


User provided reference genes

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