Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 3651.7 1885 100.0
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 3574.3 1885 98.1
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2805.8 1894 76.7
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2780.0 1896 74.9
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2679.0 1897 72.9
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2663.6 1895 72.4
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2635.5 1895 71.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2600.5 1895 71.1
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2595.8 1892 70.5
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2585.1 1905 71.1
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2580.8 1895 70.4
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2572.7 1896 70.3
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2570.8 1920 69.3
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2570.0 1898 69.9
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2542.7 1894 69.0
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2532.7 1895 68.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2531.5 1886 69.7
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2521.9 1896 68.7
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2521.5 1901 68.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2515.7 1896 68.5
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2515.7 1895 68.6
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2513.4 1896 68.8
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2513.4 1953 67.3
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2502.2 1898 68.8
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2499.9 1896 68.4
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2493.0 1929 68.2
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2493.0 1898 68.5
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2490.7 1894 67.7
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2475.7 1908 68.0
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2474.5 1896 67.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2467.6 1905 67.9
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2466.4 1898 67.5
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2466.4 1896 67.3
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2465.3 1902 67.6
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2464.1 1896 67.1
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2461.4 1911 66.9
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2459.5 1892 67.3
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2458.3 1901 67.0
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2457.9 1892 67.3
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2452.6 1897 66.8
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2449.5 1901 67.3
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2446.4 1898 66.8
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2435.2 1895 65.4
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2431.4 1902 66.6
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2426.7 2028 64.4
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2423.7 1894 67.6
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2422.5 1902 66.6
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2411.3 1896 66.2
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2399.4 1894 64.8
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2374.7 1908 65.5
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2372.0 1895 65.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2367.0 1911 65.0
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2365.5 1962 63.9
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2364.3 1721 71.1
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2343.2 1960 63.5
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2337.8 1896 64.3
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2307.7 1892 63.1
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2306.6 1893 63.3
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2305.8 1893 63.4
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2304.2 1892 63.4
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2293.8 1891 63.0
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2293.5 1902 64.2
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2292.3 1896 64.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2277.7 2025 59.6
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2269.2 2327 55.0
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2248.0 1928 61.3
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2242.2 1645 70.1
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2241.8 1895 62.3
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2237.6 1892 61.6
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2234.1 1896 62.4
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2230.3 1896 61.6
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2229.5 1927 62.0
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2219.9 1896 61.3
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2215.3 1897 61.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2179.4 1894 59.8
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2160.2 1595 69.2
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2030.4 1517 69.9
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2015.4 1482 69.2
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1985.3 1585 64.5
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1815.4 1461 65.5
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1799.6 1431 65.6
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1759.6 1920 49.2
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1710.3 1918 48.4
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1708.3 1912 48.3
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1661.7 1445 60.3
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1639.0 1434 61.1
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1630.9 1188 70.0
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1593.6 1924 45.6
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1524.6 1883 49.0
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1401.0 1249 59.4
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1400.2 1218 60.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1333.5 1951 40.9
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1286.2 1127 61.8
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1197.6 967 65.7
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1174.8 840 69.9
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1120.9 1251 50.8
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.4e-308 1063.1 780 69.5
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 2.6e-294 1016.5 1627 41.9
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.4e-268 931.0 1626 39.5
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.6e-259 901.0 762 60.6
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 9.9e-254 881.7 783 57.6
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 2.8e-232 810.4 699 61.8
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 3.6e-227 793.5 692 61.6
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 4.5e-214 750.0 1005 45.9
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.7e-208 730.3 699 55.1
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 9.1e-207 725.7 1059 40.2
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 8.0e-203 712.6 610 60.8
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.0e-202 712.2 1066 40.9
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.1e-188 665.6 520 66.5
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.1e-167 595.9 515 60.6
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.7e-157 562.0 518 59.8
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 3.4e-129 468.0 399 59.9
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.4e-111 409.5 412 57.0
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.8e-107 394.4 419 55.1
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 7.4e-100 370.5 299 63.9
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.9e-97 360.9 317 63.4
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.8e-91 342.0 230 75.7
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 3.7e-91 341.7 330 57.3
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 8.2e-91 340.5 328 57.6
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.5e-87 329.7 356 50.8
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 3.2e-87 328.6 327 56.3
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.8e-85 322.8 228 72.8
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.8e-83 315.5 277 59.6
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 7.7e-81 307.4 301 56.1
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 5.0e-80 304.7 324 54.0
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.4e-76 291.6 276 59.8
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 7.0e-58 231.1 176 67.6
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.0e-57 229.6 181 63.5
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 4.0e-53 215.3 298 46.3
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.5e-52 213.4 179 63.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-51 210.3 217 53.0
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-51 210.3 217 53.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 2.9e-51 209.1 379 37.5
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 6.4e-51 208.0 216 55.1
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 8.3e-51 207.6 1752 22.4
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 5.4e-50 204.9 332 42.5
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 1.5e-47 196.8 217 53.5
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.5e-39 169.5 1067 22.1
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-39 168.7 400 33.5
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.8e-38 166.0 168 55.4
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 3.1e-37 162.5 126 67.5
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 5.2e-37 161.8 149 59.7
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.8e-35 155.6 121 67.8
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 7.1e-34 151.4 178 51.1
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 7.8e-33 147.9 122 56.6
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 5.1e-32 145.2 301 32.9
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 8.1e-30 137.9 214 39.3
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.5e-28 133.7 82 76.8
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-28 133.3 98 66.3
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 9.9e-28 131.0 135 54.1
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 4.9e-27 128.6 75 84.0
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 1.6e-25 123.6 118 55.9
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 1.7e-24 120.2 989 22.5
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 6.6e-24 118.2 77 72.7
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.7e-24 117.9 127 46.5
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 2.4e-21 109.8 147 46.3
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 1.4e-18 100.5 81 71.6
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 2.1e-17 96.7 106 53.8
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 3.5e-17 95.9 99 54.5
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 4.6e-17 95.5 99 54.5
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 3.3e-15 89.4 74 71.6
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-15 89.0 57 78.9
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.6e-14 87.0 56 73.2
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 1.7e-11 77.0 61 68.9
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 3.8e-11 75.9 46 80.4
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.4e-10 73.2 85 47.1
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 2.4e-10 73.2 91 49.5
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.2e-09 70.9 64 48.4
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-09 70.5 43 72.1
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 7.9e-09 68.2 37 83.8
SEGI_02226 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.9e-08 65.9 116 38.8
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 1.9e-07 63.5 52 67.3
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.5e-07 63.2 73 43.8
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 5.6e-07 62.0 49 65.3
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 9.6e-07 61.2 66 53.0
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 2.1e-06 60.1 54 51.9
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 2.8e-06 59.7 33 81.8


User provided reference genes

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