Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-229 798.9 385 100.0
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-229 798.9 385 100.0
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 4.1e-199 698.0 384 87.5
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 8.7e-173 610.5 387 76.5
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 8.1e-171 604.0 384 75.5
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 3.5e-137 492.3 378 63.2
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.4e-109 400.6 376 52.4
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.5e-95 354.0 366 48.1
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 2.3e-93 346.7 364 47.3
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 4.4e-92 342.4 371 46.9
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 6.4e-91 338.6 362 47.2
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 6.4e-91 338.6 369 45.8
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 8.3e-91 338.2 362 47.8
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 7.1e-90 335.1 360 47.2
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 9.2e-90 334.7 386 45.3
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.6e-89 334.0 372 47.6
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 6.0e-89 332.0 368 46.7
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 1.7e-88 330.5 372 45.4
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 3.0e-88 329.7 371 44.2
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 3.9e-88 329.3 376 45.2
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.3e-87 325.9 368 46.2
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.3e-87 325.9 368 46.2
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 5.6e-87 325.5 353 47.3
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.5e-87 324.7 377 45.6
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 9.5e-87 324.7 376 45.7
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 2.8e-86 323.2 375 43.7
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 2.8e-86 323.2 367 46.0
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 4.7e-86 322.4 367 45.5
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.1e-85 321.2 369 45.0
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.4e-85 320.9 363 44.1
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.8e-85 320.5 368 44.3
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.8e-85 320.5 382 43.2
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 8.9e-85 318.2 373 44.2
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.9e-85 318.2 363 46.6
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.2e-84 317.8 362 46.1
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 2.0e-84 317.0 378 44.7
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.6e-84 316.6 360 45.3
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 4.4e-84 315.8 190 79.5
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 7.6e-84 315.1 366 45.1
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 1.3e-83 314.3 373 44.0
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.2e-83 313.5 363 44.6
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 3.8e-83 312.8 368 43.2
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 8.4e-83 311.6 383 42.8
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.9e-82 310.5 373 42.6
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 4.1e-82 309.3 384 42.2
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 5.4e-82 308.9 383 42.3
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 5.4e-82 308.9 371 44.5
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 1.6e-81 307.4 353 46.7
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.7e-81 306.6 363 44.1
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 4.6e-81 305.8 363 43.5
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.0e-81 305.4 368 41.8
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 6.0e-81 305.4 373 43.7
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.0e-80 304.7 367 43.3
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.7e-80 303.9 372 44.6
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.7e-80 303.9 362 44.8
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 3.9e-80 302.8 372 43.3
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 5.1e-80 302.4 372 42.5
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 6.6e-80 302.0 363 43.5
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.5e-79 300.1 360 43.1
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.3e-79 299.7 372 43.3
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 3.3e-79 299.7 361 42.4
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.1e-78 297.0 376 41.8
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.8e-78 296.6 363 44.9
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 2.8e-78 296.6 382 41.1
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.7e-78 295.8 378 41.8
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 6.2e-78 295.4 396 39.4
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.2e-78 295.4 363 43.5
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 8.1e-78 295.0 360 41.4
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 1.4e-77 294.3 363 41.9
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.4e-77 293.5 399 39.6
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 4.0e-77 292.7 366 41.5
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 5.2e-77 292.4 397 43.6
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 5.2e-77 292.4 364 43.1
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 6.9e-77 292.0 371 42.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 2.0e-76 290.4 389 40.4
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.0e-76 290.4 366 41.8
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 2.6e-76 290.0 373 39.7
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 9.9e-76 288.1 386 41.2
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 2.9e-75 286.6 222 61.7
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 6.4e-75 285.4 369 40.4
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.1e-74 284.6 386 40.2
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.2e-73 281.2 367 42.2
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.6e-73 280.8 365 40.0
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.7e-72 277.3 397 41.3
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 2.3e-72 276.9 375 38.4
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.1e-72 275.8 310 45.5
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 5.1e-72 275.8 365 43.6
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.7e-72 275.0 365 39.7
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.1e-71 274.6 368 41.6
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.5e-71 273.5 377 38.7
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 4.3e-71 272.7 379 41.2
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 7.3e-71 271.9 375 40.0
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.6e-70 270.8 341 39.6
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.4e-69 266.9 375 38.7
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 3.4e-68 263.1 261 48.7
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 2.2e-67 260.4 380 38.7
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 4.9e-67 259.2 384 38.8
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 1.9e-66 257.3 376 38.6
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 3.2e-66 256.5 368 38.9
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.5e-65 253.1 367 37.9
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 4.6e-65 252.7 269 46.1
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 6.0e-65 252.3 378 38.1
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 7.9e-65 251.9 380 37.1
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.0e-64 251.5 248 50.8
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.3e-64 251.1 387 37.5
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.3e-64 251.1 387 37.5
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 2.3e-64 250.4 370 38.4
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 5.1e-64 249.2 359 39.0
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 8.7e-64 248.4 358 36.6
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.5e-63 247.7 376 38.8
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 3.3e-63 246.5 389 36.8
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 4.3e-63 246.1 371 37.5
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 5.6e-63 245.7 371 38.5
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.8e-62 243.4 338 39.1
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 2.8e-62 243.4 372 38.4
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 6.2e-62 242.3 370 38.6
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.1e-61 241.5 368 38.0
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.1e-61 241.5 365 36.4
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.4e-61 241.1 376 38.6
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 1.4e-61 241.1 269 44.2
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 6.9e-61 238.8 372 36.3
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 2.6e-60 236.9 375 36.5
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 5.8e-60 235.7 373 36.2
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 4.9e-59 232.6 393 37.9
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.1e-57 227.3 373 37.3
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 3.5e-57 226.5 292 42.1
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 7.9e-57 225.3 269 44.6
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 2.8e-54 216.9 361 34.3
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 7.6e-52 208.8 371 36.4
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-49 201.1 223 47.1
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 9.7e-47 191.8 227 44.5
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 9.0e-45 185.3 268 40.7
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.5e-35 152.1 191 45.5
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 4.7e-33 146.4 386 29.3
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 9.7e-31 138.7 359 30.1
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 8.2e-30 135.6 195 39.5
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 2.0e-28 131.0 189 38.1
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.5e-27 125.6 390 27.2
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.1e-23 115.2 346 27.7
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 7.4e-23 112.5 346 27.2
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 1.4e-21 108.2 346 26.3
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 1.4e-21 108.2 346 26.3
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 1.8e-21 107.8 339 26.5
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 2.6e-20 104.0 346 25.4
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 2.6e-20 104.0 346 25.4
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.6e-20 104.0 354 27.4
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 5.9e-20 102.8 413 25.9
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 7.7e-20 102.4 360 25.0
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.7e-19 101.3 263 30.4
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 3.8e-19 100.1 343 25.9
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 5.0e-19 99.8 369 25.2
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 6.5e-19 99.4 149 34.9
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.5e-19 99.0 219 29.7
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.2e-18 97.1 126 36.5
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.2e-17 95.1 343 24.2
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.2e-17 95.1 304 27.3
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.2e-17 95.1 304 27.3
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.4e-16 91.7 78 50.0
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 1.8e-16 91.3 385 23.9
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 2.3e-16 90.9 341 24.9
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 4.0e-16 90.1 299 27.8
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 7.5e-15 85.9 117 45.3
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 2.8e-14 84.0 351 23.6
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 1.1e-13 82.0 351 23.6
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.4e-13 81.6 94 45.7
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 7.7e-12 75.9 336 22.0
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 5.0e-11 73.2 98 37.8
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.2e-07 62.0 364 24.2


User provided reference genes

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