Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 7.7e-121 437.2 224 100.0
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 8.5e-112 407.1 224 93.3
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 3.6e-110 401.7 224 92.0
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 7.3e-87 324.3 224 73.2
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 6.1e-86 321.2 225 73.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.5e-81 305.4 224 69.2
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 3.0e-80 302.4 230 67.8
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 6.6e-80 301.2 221 71.9
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 4.7e-78 295.0 204 73.5
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 4.1e-74 282.0 201 72.1
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 3.9e-72 275.4 208 67.3
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.8e-69 266.5 214 65.9
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 3.4e-68 262.3 201 64.2
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.3e-67 260.4 227 62.1
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 3.2e-66 255.8 226 61.9
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 3.2e-66 255.8 212 63.7
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 9.2e-66 254.2 212 63.7
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 9.2e-66 254.2 212 63.7
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.2e-65 253.8 223 62.3
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 3.5e-65 252.3 220 61.4
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 7.8e-65 251.1 220 60.5
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.3e-64 250.4 220 60.9
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 6.6e-64 248.1 230 58.3
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 8.6e-64 247.7 220 60.0
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.9e-63 246.5 225 57.8
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.5e-63 246.1 220 59.5
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.3e-63 245.7 220 61.4
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 9.5e-63 244.2 222 60.4
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.6e-62 243.4 244 56.1
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.8e-62 242.7 203 64.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 6.2e-62 241.5 218 59.6
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.8e-61 240.0 211 60.7
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 8.9e-61 237.7 216 59.3
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 8.9e-61 237.7 221 60.2
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.5e-60 236.9 215 58.6
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 4.4e-60 235.3 215 58.1
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 4.9e-59 231.9 217 58.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 8.4e-59 231.1 222 56.3
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.1e-58 230.7 182 66.5
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.4e-58 229.6 226 57.5
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 7.1e-58 228.0 217 58.1
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.2e-57 227.3 212 60.4
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.2e-57 227.3 219 57.5
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.1e-57 226.5 227 56.4
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.3e-56 223.8 236 53.4
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.7e-56 223.4 229 53.7
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.3e-56 223.0 229 53.7
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 8.6e-56 221.1 202 58.4
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 4.3e-55 218.8 222 55.0
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 5.6e-55 218.4 224 53.6
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 9.6e-55 217.6 224 54.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 9.6e-55 217.6 190 59.5
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.1e-54 216.5 221 55.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.1e-54 216.5 224 57.1
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.8e-54 216.1 227 53.3
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.8e-54 216.1 217 56.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 4.7e-54 215.3 227 53.3
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.7e-54 215.3 203 56.7
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 4.7e-54 215.3 227 53.3
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 4.7e-54 215.3 208 55.8
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 8.1e-54 214.5 226 51.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.1e-54 214.5 212 55.2
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 1.1e-53 214.2 212 55.2
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.8e-53 213.4 226 51.8
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 2.4e-53 213.0 219 53.0
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 2.4e-53 213.0 213 56.3
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.0e-53 212.2 221 50.2
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 4.0e-53 212.2 227 53.3
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 5.2e-53 211.8 226 51.3
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 5.2e-53 211.8 226 51.3
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 5.2e-53 211.8 221 54.3
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 6.8e-53 211.5 219 54.3
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 2.0e-52 209.9 210 54.8
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 2.6e-52 209.5 216 53.2
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.6e-52 209.5 213 53.5
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.3e-51 207.2 221 53.8
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 2.2e-51 206.5 272 47.1
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.2e-51 206.5 177 59.3
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.9e-51 206.1 220 53.2
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 3.8e-51 205.7 204 54.9
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 3.8e-51 205.7 226 48.7
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 3.8e-51 205.7 213 51.6
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.9e-51 205.3 209 52.2
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 6.4e-51 204.9 243 49.0
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.1e-50 204.1 232 50.9
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 3.2e-50 202.6 215 50.2
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 5.4e-50 201.8 220 52.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 9.3e-50 201.1 194 56.7
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.2e-49 200.7 220 51.4
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 4.6e-49 198.7 244 48.4
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.3e-48 197.2 225 48.4
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.0e-48 196.1 190 56.3
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 3.9e-48 195.7 210 52.9
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.5e-47 193.7 181 58.0
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.5e-47 193.0 213 50.2
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.3e-47 192.6 209 46.4
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 7.3e-47 191.4 202 50.0
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.3e-46 190.7 187 56.7
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.8e-46 189.5 210 51.4
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 2.4e-45 186.4 292 42.1
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 2.4e-45 186.4 214 52.3
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.3e-43 180.6 166 60.2
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 2.4e-42 176.4 153 62.1
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 3.2e-42 176.0 198 52.0
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 6.0e-41 171.8 250 42.8
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.7e-40 170.2 357 35.9
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.3e-40 169.9 201 43.8
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.6e-40 168.3 118 66.9
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.3e-39 165.6 188 47.9
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.3e-39 165.6 263 43.7
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.3e-38 164.1 245 44.1
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.8e-37 160.2 152 58.6
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 5.8e-36 155.2 161 56.5
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.3e-35 154.1 159 54.7
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 2.4e-34 149.8 131 60.3
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.8e-32 143.7 152 55.9
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 8.7e-32 141.4 171 50.3
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.8e-30 136.3 117 63.2
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 3.7e-30 136.0 124 58.9
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.8e-28 128.6 143 51.7
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.2e-25 120.9 162 46.9
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.5e-25 119.4 217 39.2
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 7.9e-25 118.2 216 35.6
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.1e-22 110.2 213 35.7
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 4.1e-21 105.9 204 31.4
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 9.0e-21 104.8 172 41.3
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.8e-19 99.4 92 58.7
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.2e-18 95.9 94 53.2
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.7e-17 93.2 155 40.6
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 7.9e-17 91.7 226 29.2
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.0e-16 91.3 100 51.0
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 2.5e-15 86.7 99 48.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.3e-14 82.0 173 35.8
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 3.1e-13 79.7 84 57.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.2e-12 77.8 200 31.0
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 7.7e-12 75.1 88 47.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 7.7e-12 75.1 88 47.7
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.7e-11 73.9 57 68.4
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 1.4e-10 70.9 45 73.3
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.6e-09 67.4 53 66.0
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.1e-07 61.2 83 43.4
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.6e-07 60.1 75 41.3
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 4.8e-06 55.8 61 52.5


User provided reference genes

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