Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1369.0 697 100.0
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1244.6 637 98.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1162.5 636 90.4
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 637 90.6
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 637 90.4
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 637 90.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 638 89.3
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 638 89.3
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 637 90.1
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 637 89.2
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 635 89.9
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 637 89.5
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1151.7 637 89.3
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 684 84.2
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 637 89.5
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 637 89.8
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 634 89.7
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 651 87.4
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 635 89.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 631 89.7
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 650 88.0
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 637 88.5
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 633 90.2
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 637 88.5
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 637 88.1
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 89.2
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 637 87.9
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 637 87.6
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 637 89.0
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 637 88.2
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 633 89.6
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 651 86.6
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 637 88.7
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 647 87.6
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 633 88.9
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 636 89.0
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 634 88.5
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 637 87.3
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 637 87.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 634 89.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 633 88.5
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 637 88.1
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 636 87.9
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 632 89.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1129.0 633 88.6
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1129.0 630 87.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 631 88.6
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 637 87.1
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 636 86.8
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 636 86.5
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 633 87.5
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 634 87.1
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 637 87.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 637 86.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 637 87.1
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 635 86.6
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 635 86.6
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 647 84.5
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 637 87.8
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 637 87.0
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 633 86.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 633 86.7
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 637 87.6
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 634 86.4
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 633 86.6
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 637 87.8
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 637 87.0
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 636 86.8
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 637 86.8
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 637 86.8
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 637 86.8
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 664 84.2
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 637 87.6
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 637 87.4
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1116.7 637 86.8
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1116.7 637 86.0
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 637 86.2
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 637 86.3
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 628 87.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1113.2 632 86.2
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1112.1 632 87.3
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 632 87.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 637 86.3
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 637 85.7
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 649 85.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1105.1 632 86.6
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1102.4 634 86.3
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1101.3 637 85.9
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 634 85.3
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1094.3 643 82.9
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1094.0 645 83.7
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1090.5 645 83.4
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1087.4 633 84.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1086.6 649 82.4
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1085.5 636 84.1
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1083.9 668 80.5
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.2e-308 1062.8 628 83.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 2.0e-308 1062.0 645 81.9
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.7e-307 1058.9 628 83.0
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 3.2e-306 1054.7 647 83.2
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 2.3e-304 1048.5 628 81.7
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.2e-302 1042.7 582 87.5
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.4e-298 1029.2 630 80.5
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 5.4e-290 1000.7 632 78.5
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.7e-283 979.2 541 90.2
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.3e-279 964.5 534 88.4
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.1e-278 962.2 534 88.6
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.8e-267 924.9 648 72.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 9.0e-261 903.7 500 89.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.4e-260 901.7 638 71.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.6e-257 892.9 676 68.5
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 3.0e-256 888.6 649 70.0
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.2e-243 845.9 503 84.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 3.2e-242 842.0 634 71.6
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.6e-239 832.4 503 82.9
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 5.0e-235 818.1 636 69.2
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.4e-234 816.6 635 66.3
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 4.2e-234 815.1 497 81.9
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.0e-223 779.6 642 61.7
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 4.4e-199 698.7 444 79.7
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.9e-194 683.3 533 69.4
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.9e-178 630.2 643 53.0
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.3e-178 629.4 445 74.6
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.5e-175 620.5 354 87.6
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.6e-164 583.9 411 74.2
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 8.4e-158 561.6 315 89.2
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 6.9e-144 515.4 300 83.7
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.3e-134 484.6 278 87.4
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 3.1e-112 410.2 527 42.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 9.1e-96 355.5 201 87.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.7e-86 324.7 248 67.7
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.1e-85 322.0 184 88.0
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.8e-83 314.7 231 71.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 5.2e-75 286.6 162 85.2
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.2e-73 281.2 637 33.8
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 9.2e-72 275.8 163 82.8
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.2e-55 222.2 273 48.0
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 4.7e-52 210.3 245 54.7
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 8.7e-46 189.5 104 92.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.3e-41 175.6 104 84.6
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.1e-37 162.5 168 56.5
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 3.3e-37 161.0 90 87.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 5.6e-37 160.2 86 86.0
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 7.4e-37 159.8 99 78.8
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 9.6e-37 159.5 104 72.1
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.9e-32 145.2 144 56.9
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.6e-31 142.1 91 78.0
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.3e-30 138.3 172 48.8
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 7.4e-29 133.3 74 81.1
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.2e-20 105.1 53 96.2
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.2e-20 105.1 116 51.7
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 6.5e-17 93.6 70 67.1
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.4e-16 92.4 84 59.5
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 9.4e-16 89.7 51 80.4
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.2e-15 89.4 49 83.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.8e-14 85.5 63 63.5
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 2.2e-12 78.6 56 64.3
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.9e-08 65.5 43 69.8


User provided reference genes

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