Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1525.8 768 100.0
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1484.5 789 95.6
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1200.3 789 77.1
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1148.3 772 74.7
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1147.9 770 76.0
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1102.8 779 72.7
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1102.4 763 74.6
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1102.0 761 74.6
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1098.2 783 72.3
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1090.5 737 74.4
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1088.9 778 71.7
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1088.2 767 73.0
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1080.9 782 71.9
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1079.7 767 71.6
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1078.5 771 72.8
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 3.0e-310 1068.1 764 72.0
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 3.0e-310 1068.1 758 73.0
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 8.8e-310 1066.6 762 71.8
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 4.4e-309 1064.3 762 71.0
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.8e-308 1061.6 769 70.7
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 3.1e-307 1058.1 784 71.8
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 1.6e-303 1045.8 771 70.6
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 2.8e-303 1045.0 771 70.4
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 3.6e-303 1044.6 761 70.4
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.4e-302 1042.7 777 69.6
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 3.0e-302 1041.6 795 69.7
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 8.9e-302 1040.0 773 69.5
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 8.9e-302 1040.0 763 70.6
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 9.8e-301 1036.6 770 69.4
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 2.9e-300 1035.0 760 69.7
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 3.2e-299 1031.6 761 70.7
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.2e-298 1029.6 768 69.8
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 4.6e-298 1027.7 768 68.6
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 1.3e-297 1026.2 782 68.8
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 3.9e-297 1024.6 776 68.0
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 6.6e-297 1023.8 770 69.2
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 8.6e-297 1023.5 771 68.7
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 4.3e-296 1021.1 772 68.5
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 9.5e-296 1020.0 768 68.1
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 2.1e-295 1018.8 777 68.1
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 3.6e-295 1018.1 781 67.7
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 6.2e-295 1017.3 772 68.7
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 8.9e-294 1013.4 789 67.9
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 1.2e-293 1013.1 762 67.5
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 3.4e-293 1011.5 732 70.4
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 7.5e-293 1010.4 787 66.8
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 2.2e-292 1008.8 762 67.7
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.4e-291 1006.1 762 68.1
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 5.4e-291 1004.2 762 67.6
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 7.8e-290 1000.3 767 68.4
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 2.3e-289 998.8 772 67.1
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 6.6e-289 997.3 777 66.2
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.1e-288 996.5 772 67.0
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.5e-288 996.1 808 66.0
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 7.5e-285 983.8 767 67.8
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 1.7e-281 972.6 767 67.7
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.3e-281 972.2 769 66.7
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 6.6e-281 970.7 767 67.5
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 4.7e-279 964.5 766 64.0
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 8.1e-279 963.8 764 65.4
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.1e-278 963.4 773 65.1
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 1.7e-276 956.1 765 64.4
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.7e-276 956.1 769 66.1
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.8e-276 954.9 774 65.6
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 1.2e-274 949.9 760 65.0
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 1.0e-273 946.8 769 65.4
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.2e-268 929.1 768 65.5
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 9.3e-267 923.7 764 63.0
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 2.1e-266 922.5 779 64.7
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 4.6e-266 921.4 689 69.8
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.0e-265 920.2 764 63.4
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 1.1e-264 916.8 769 62.4
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 2.8e-263 912.1 951 54.6
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 3.6e-263 911.8 765 63.0
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 1.4e-262 909.8 769 62.4
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 5.8e-261 904.4 764 61.6
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 2.4e-259 899.0 776 61.6
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 3.2e-259 898.7 767 61.3
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 3.2e-259 898.7 767 61.3
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 2.3e-257 892.5 788 59.9
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 5.6e-256 887.9 764 60.6
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 1.8e-254 882.9 519 82.3
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 4.0e-254 881.7 515 82.5
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.3e-254 881.3 646 71.2
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 7.6e-253 877.5 725 63.0
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.3e-252 876.7 773 59.4
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 4.9e-252 874.8 767 60.1
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 4.6e-250 868.2 741 60.5
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.8e-246 856.3 741 61.5
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 2.4e-246 855.9 761 60.7
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 2.4e-246 855.9 510 80.6
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.2e-242 843.6 775 56.9
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 5.5e-235 818.1 773 58.2
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 3.3e-232 808.9 821 51.4
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 8.5e-228 794.3 762 59.1
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 2.6e-224 782.7 848 49.9
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 4.4e-216 755.4 761 55.3
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 1.3e-215 753.8 645 60.9
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 6.1e-210 734.9 773 50.1
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 2.0e-200 703.4 721 51.0
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.3e-188 664.1 761 49.7
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 5.0e-188 662.1 785 46.2
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.0e-180 637.9 758 47.1
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.3e-180 637.5 758 47.2
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-177 627.5 724 48.3
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.8e-177 625.2 758 46.4
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 7.5e-176 621.7 771 48.9
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.9e-171 607.1 334 84.4
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.9e-159 566.6 467 67.5
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 5.5e-134 482.6 469 58.0
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 7.2e-118 429.1 418 54.5
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 1.7e-90 338.2 182 87.9
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 2.0e-88 331.3 506 38.1
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 5.5e-86 323.2 217 70.5
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 7.2e-86 322.8 547 35.1
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.3e-82 312.0 240 65.4
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 1.8e-73 281.6 477 34.6
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 4.3e-70 270.4 377 48.5
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 1.6e-64 251.9 289 51.9
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.3e-62 243.8 182 65.4
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 6.4e-58 229.9 250 57.6
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 2.4e-57 228.0 250 57.2
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.3e-54 217.6 132 80.3
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 4.6e-48 197.2 126 75.4
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 4.4e-43 180.6 137 65.0
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.3e-37 162.5 227 46.7
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 9.3e-33 146.4 186 53.2
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 2.1e-32 145.2 109 64.2
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.9e-30 138.7 160 56.9
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 1.1e-28 132.9 105 64.8
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.2e-27 129.4 141 49.6
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.9e-18 98.2 55 76.4
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.9e-17 95.5 128 49.2
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 4.6e-16 90.9 66 66.7
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 9.6e-14 83.2 148 38.5
PSO017G4536 Papaver somniferum HOM05D002279 ORTHO05D002644 8.2e-13 80.1 524 21.9
PSO063G2201 Papaver somniferum HOM05D002279 ORTHO05D002644 1.4e-12 79.3 524 22.3
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.5e-11 75.9 492 20.5
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 5.9e-11 73.9 493 21.3
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.3e-10 72.8 414 22.5
CDE11G0963 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 1.7e-10 72.4 448 20.8
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 2.2e-10 72.0 59 62.7
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 2.9e-10 71.6 513 21.1
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 3.2e-09 68.2 483 19.3
Duzib133G0328 Durio zibethinus HOM05D002279 ORTHO05D002644 5.5e-09 67.4 517 19.1
Duzib211G0092 Durio zibethinus HOM05D002279 ORTHO05D002644 7.2e-09 67.0 517 19.1
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 9.3e-09 66.6 364 22.0
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.2e-08 66.2 507 19.1
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.2e-08 66.2 500 21.2
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 2.1e-08 65.5 507 19.1
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.7e-08 65.1 507 19.1
A10p02540 Brassica napus HOM05D002279 ORTHO05D002644 3.6e-08 64.7 499 19.2
Cfa027011 Carpinus fangiana HOM05D002279 ORTHO05D002644 4.6e-08 64.3 361 18.6
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 7.9e-08 63.5 489 19.4
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.0e-07 63.2 522 18.8
C05p02340 Brassica napus HOM05D002279 ORTHO05D002644 1.3e-07 62.8 529 18.5
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 1.8e-07 62.4 503 20.1
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.8e-07 62.4 523 18.7
CBR_g40786 Chara braunii HOM05D002279 ORTHO05D002644 3.0e-07 61.6 556 20.5
Gorai.001G237700 Gossypium raimondii HOM05D002279 ORTHO05D002644 3.0e-07 61.6 551 19.6
Actinidia37548 Actinidia chinensis HOM05D002279 ORTHO05D002644 3.9e-07 61.2 323 20.7
CARHR003420 Cardamine hirsuta HOM05D002279 ORTHO05D002644 5.1e-07 60.8 361 21.1
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 5.1e-07 60.8 523 18.2
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 8.7e-07 60.1 346 21.7
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.1e-06 59.7 324 21.0
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.5e-06 59.3 94 44.7
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 1.5e-06 59.3 500 19.4
EL10Ac7g17680 Beta vulgaris HOM05D002279 ORTHO05D002644 1.9e-06 58.9 385 21.8
Ciclev10018866m.g Citrus clementina HOM05D002279 ORTHO05D002644 1.9e-06 58.9 362 21.8
Gohir.A07G204300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.9e-06 58.9 547 18.6
Atru.chr5.1840 Acer truncatum HOM05D002279 ORTHO05D002644 2.5e-06 58.5 365 21.1
BcaC05g24473 Brassica carinata HOM05D002279 ORTHO05D002644 2.5e-06 58.5 474 18.4
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 2.5e-06 58.5 336 21.7
Prupe.8G215900 Prunus persica HOM05D002279 ORTHO05D002644 3.3e-06 58.2 393 21.6
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 4.3e-06 57.8 356 23.0
Glyma.03G167000 Glycine max HOM05D002279 ORTHO05D002644 4.3e-06 57.8 452 20.8
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 4.3e-06 57.8 540 19.8
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 4.3e-06 57.8 327 19.9
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 9.7e-06 56.6 327 22.0
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 9.7e-06 56.6 356 22.5
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 9.7e-06 56.6 65 52.3


User provided reference genes

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