Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 8.3e-220 766.9 442 100.0
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 3.5e-210 734.9 443 96.8
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.3e-142 508.4 436 64.7
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.0e-142 508.1 446 69.5
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.0e-141 506.5 447 66.4
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.2e-138 497.3 435 64.8
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 3.7e-135 485.7 443 63.4
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.3e-132 477.2 498 57.0
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.6e-130 469.2 445 64.5
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.0e-129 467.6 445 64.5
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.0e-129 467.6 450 63.3
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.4e-129 467.2 457 59.3
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 8.9e-129 464.5 449 60.1
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.2e-128 464.2 446 61.4
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 2.6e-128 463.0 450 63.3
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.4e-126 457.2 473 56.9
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.2e-126 456.1 450 59.8
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.4e-126 455.3 444 59.5
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 2.7e-125 453.0 444 59.2
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.7e-125 453.0 444 59.2
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 7.8e-125 451.4 445 59.8
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 7.8e-125 451.4 449 59.5
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.0e-124 451.1 447 57.9
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.3e-124 450.7 450 61.8
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.3e-124 450.7 446 60.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.9e-124 449.5 447 61.5
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 6.6e-124 448.4 448 58.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 6.6e-124 448.4 445 61.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 6.6e-124 448.4 444 58.1
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-123 446.4 443 58.5
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 2.5e-123 446.4 444 63.3
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 5.6e-123 445.3 450 60.4
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 9.5e-123 444.5 444 59.9
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 9.5e-123 444.5 444 57.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 9.5e-123 444.5 446 59.6
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.2e-122 444.1 446 58.5
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.6e-122 443.7 453 56.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-122 443.4 444 58.1
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.7e-122 442.2 448 63.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.1e-122 441.8 444 58.1
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.1e-122 441.8 444 59.2
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.3e-121 439.9 448 58.7
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.1e-121 439.5 448 62.7
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.0e-121 439.1 444 61.7
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 6.8e-121 438.3 455 55.6
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.2e-120 437.6 450 60.0
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.0e-120 436.8 449 59.0
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 3.4e-120 436.0 451 59.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 3.4e-120 436.0 452 56.9
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 4.4e-120 435.6 450 59.8
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 7.5e-120 434.9 457 55.8
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.7e-119 433.7 452 58.6
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.7e-119 433.7 444 60.8
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.7e-119 433.7 444 60.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.7e-119 433.7 450 58.0
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 4.9e-119 432.2 449 59.7
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.9e-119 432.2 459 60.8
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 6.4e-119 431.8 450 57.1
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 6.4e-119 431.8 448 56.5
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 6.4e-119 431.8 450 57.1
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.3e-119 431.4 449 57.2
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 8.3e-119 431.4 445 66.5
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.4e-118 430.6 448 58.7
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.4e-118 429.9 456 55.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 2.4e-118 429.9 448 56.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.2e-118 429.5 451 60.8
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 4.1e-118 429.1 450 58.4
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.2e-117 427.6 446 58.1
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.0e-117 426.8 445 58.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 7.8e-117 424.9 444 55.2
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.0e-116 424.5 465 58.7
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.3e-116 424.1 436 57.1
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 3.9e-116 422.5 453 56.1
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.9e-115 420.2 448 55.6
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.5e-115 419.9 474 53.2
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 2.5e-115 419.9 451 55.7
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 4.3e-115 419.1 443 57.3
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 7.3e-115 418.3 441 61.7
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.6e-114 417.2 442 60.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 1.1e-113 414.5 452 55.3
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.4e-113 414.1 489 52.1
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.8e-113 413.7 447 55.7
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.1e-113 412.9 447 58.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.1e-113 412.9 445 57.3
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.1e-113 412.9 449 58.4
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 6.8e-113 411.8 447 55.0
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.0e-112 410.2 451 58.5
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 7.5e-112 408.3 448 54.9
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 9.8e-112 407.9 450 61.3
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.3e-111 407.5 444 56.3
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.7e-111 407.1 448 54.7
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.9e-111 406.4 456 54.4
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 4.9e-111 405.6 447 54.8
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 8.3e-111 404.8 445 58.9
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.4e-110 404.1 495 50.5
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.2e-109 401.0 448 58.0
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 7.8e-109 398.3 446 53.8
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.3e-108 397.5 445 57.8
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.3e-108 397.5 436 59.9
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 2.3e-108 396.7 446 57.6
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 6.6e-108 395.2 466 56.7
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 7.3e-107 391.7 443 59.8
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.5e-104 384.0 442 51.8
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.4e-104 382.5 445 57.3
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 5.1e-100 369.0 439 57.4
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 5.1e-100 369.0 436 55.5
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.9e-99 367.1 452 54.2
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 4.3e-99 365.9 474 49.4
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.4e-96 356.3 379 54.1
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.1e-94 351.3 443 54.0
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 7.3e-91 338.6 444 53.2
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 7.3e-91 338.6 299 62.2
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.2e-88 331.3 440 51.8
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 5.4e-86 322.4 382 56.0
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 4.3e-83 312.8 386 51.6
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.8e-81 307.4 324 59.6
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.9e-81 305.4 378 56.6
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.5e-80 304.3 384 52.3
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.4e-78 297.0 476 47.7
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 4.6e-77 292.7 443 44.0
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 4.2e-70 269.6 433 45.5
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.8e-60 237.7 145 80.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 5.7e-59 232.6 249 55.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.7e-55 221.1 264 54.9
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 6.5e-55 219.2 213 59.2
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.7e-51 205.3 139 74.8
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.7e-51 205.3 446 39.0
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 8.2e-50 202.2 446 39.0
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.7e-45 187.2 268 43.7
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.7e-45 187.2 268 43.7
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.5e-38 164.9 360 39.7
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 7.2e-38 162.5 343 37.6
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.1e-30 138.7 130 53.1
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.5e-30 137.5 85 78.8
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.2e-30 137.1 258 40.3
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.2e-30 137.1 258 40.3
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.0e-28 132.1 199 43.2
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 4.0e-28 130.2 74 82.4
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 4.1e-25 120.2 215 40.0
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 7.0e-25 119.4 69 84.1
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 9.1e-25 119.0 111 57.7
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.6e-24 118.2 68 80.9
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 2.0e-24 117.9 85 69.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.5e-24 117.1 70 81.4
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 5.9e-24 116.3 85 68.2
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 4.7e-21 106.7 110 52.7
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 4.7e-21 106.7 110 52.7
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.5e-14 85.1 137 46.0
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.7e-13 80.1 62 69.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.5e-11 75.1 545 25.7
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 1.5e-06 58.5 66 47.0
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 3.3e-06 57.4 61 49.2
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 5.6e-06 56.6 88 39.8
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 9.5e-06 55.8 118 39.8


User provided reference genes

Program Settings