Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 9.2e-110 400.2 198 100.0
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 3.3e-107 391.7 198 99.0
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 8.1e-82 307.4 198 75.3
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 9.0e-81 303.9 195 75.4
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.3e-79 300.1 196 72.4
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 2.2e-79 299.3 197 72.6
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 8.4e-79 297.4 196 73.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 2.1e-77 292.7 194 71.1
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.7e-76 289.7 198 72.2
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.5e-75 286.6 198 69.7
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 4.3e-75 285.0 198 67.7
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.6e-74 283.1 199 68.3
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 8.1e-74 280.8 200 67.0
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.8e-73 279.6 199 67.3
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 6.9e-73 277.7 200 67.5
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 3.4e-72 275.4 201 67.7
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 3.4e-72 275.4 195 67.7
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.5e-72 275.0 200 67.0
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 5.8e-72 274.6 201 67.7
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 5.8e-72 274.6 198 66.2
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 5.8e-72 274.6 200 67.5
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 5.8e-72 274.6 194 66.0
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.7e-71 273.1 200 64.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.2e-71 272.7 194 67.0
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 2.9e-71 272.3 200 65.5
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.9e-71 272.3 194 64.4
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 8.4e-71 270.8 200 65.5
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 8.4e-71 270.8 188 66.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.1e-70 270.4 198 67.7
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 4.2e-70 268.5 201 66.2
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 4.2e-70 268.5 200 65.0
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.6e-69 266.5 200 65.0
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.5e-69 265.4 202 64.4
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.6e-69 265.0 199 64.8
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.0e-69 264.6 201 63.2
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.0e-69 264.6 201 63.2
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 3.9e-68 261.9 198 63.1
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.1e-68 261.5 198 64.6
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.1e-68 261.5 198 64.6
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 5.1e-68 261.5 201 63.2
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 6.7e-68 261.2 200 63.0
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.1e-67 260.4 199 61.3
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.9e-67 259.6 198 64.6
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.5e-67 259.2 202 64.4
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.3e-67 258.8 198 63.1
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.3e-67 258.5 198 63.1
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 5.6e-67 258.1 200 62.5
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.3e-66 256.9 199 62.3
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.3e-66 256.9 198 63.1
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.6e-66 256.5 202 61.4
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 3.7e-66 255.4 199 62.8
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.8e-66 255.0 198 62.1
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.1e-65 253.8 192 64.1
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.4e-65 253.4 202 61.4
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 2.4e-65 252.7 202 60.4
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 3.1e-65 252.3 197 60.4
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 4.0e-65 251.9 199 64.8
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 5.3e-65 251.5 202 59.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 5.3e-65 251.5 197 60.4
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 6.9e-65 251.1 188 64.4
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 9.0e-65 250.8 202 60.9
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 9.0e-65 250.8 202 59.9
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 9.0e-65 250.8 188 64.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.2e-64 250.4 231 56.7
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.5e-64 250.0 191 62.8
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 3.4e-64 248.8 202 59.9
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 5.8e-64 248.1 184 65.2
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 7.6e-64 247.7 201 61.2
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.0e-63 247.3 202 59.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 1.7e-63 246.5 225 57.3
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 2.9e-63 245.7 197 57.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.8e-63 245.4 199 59.3
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 6.5e-63 244.6 199 59.3
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 8.4e-63 244.2 200 59.0
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 8.4e-63 244.2 200 59.0
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.4e-62 243.4 199 57.8
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.9e-62 243.0 170 66.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.9e-62 243.0 197 57.4
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 5.5e-62 241.5 173 65.3
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.2e-61 240.4 195 59.0
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.2e-61 240.4 202 57.4
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.2e-61 240.4 199 58.8
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.2e-61 240.4 199 58.8
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.2e-61 240.4 225 55.1
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.6e-61 240.0 192 60.9
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.1e-61 239.6 225 54.7
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 6.0e-61 238.0 224 54.9
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.3e-60 236.9 196 61.2
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.3e-60 236.9 190 57.4
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.8e-60 236.5 190 57.4
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.0e-60 235.7 190 57.4
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.9e-60 235.3 192 58.9
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.1e-59 233.8 228 53.1
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 4.3e-59 231.9 200 55.5
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 4.8e-58 228.4 189 58.7
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.1e-57 227.3 192 57.8
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.1e-57 225.7 203 58.6
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 5.3e-57 224.9 198 59.6
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 5.3e-57 224.9 246 50.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 2.0e-56 223.0 228 51.3
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.3e-55 220.3 193 55.4
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.2e-55 219.5 231 47.2
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.4e-54 216.9 267 44.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 3.2e-54 215.7 231 48.1
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 4.2e-54 215.3 192 54.2
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 4.2e-54 215.3 228 47.8
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 7.2e-54 214.5 228 48.2
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 9.3e-54 214.2 188 52.7
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.1e-53 213.0 195 50.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 3.5e-53 212.2 193 54.4
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.3e-52 209.5 221 48.9
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.3e-52 209.5 148 67.6
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.5e-51 206.1 199 51.8
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.5e-51 206.1 199 51.8
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 4.3e-51 205.3 145 67.6
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 5.7e-51 204.9 151 64.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 2.8e-50 202.6 190 53.7
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 2.8e-50 202.6 250 44.8
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 4.8e-50 201.8 142 66.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 9.0e-49 197.6 194 51.5
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.9e-46 189.9 144 63.9
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 7.2e-46 188.0 216 46.8
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.6e-45 185.7 134 64.9
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.3e-43 178.7 157 56.1
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.3e-42 177.2 116 72.4
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.8e-42 176.0 119 69.7
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.4e-41 173.7 198 50.0
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.4e-41 173.7 175 53.1
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.1e-41 172.6 154 55.2
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.2e-40 170.6 196 46.4
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.0e-40 169.9 149 55.0
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 5.9e-40 168.3 195 42.6
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 5.9e-40 168.3 190 51.1
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.9e-39 166.0 190 46.3
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 7.9e-37 157.9 204 41.7
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.0e-36 156.0 188 44.7
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.4e-35 152.1 197 43.7
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.2e-34 149.8 119 60.5
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 8.2e-34 147.9 119 59.7
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.6e-32 143.7 109 60.6
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 3.5e-32 142.5 159 49.7
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.9e-31 139.4 114 57.9
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 9.4e-30 134.4 113 56.6
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 2.3e-28 129.8 195 31.8
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.4e-27 125.6 110 52.7
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.5e-24 115.9 86 62.8
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-23 113.6 82 69.5
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.4e-20 104.0 124 46.8
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 5.2e-20 102.1 197 37.6
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.5e-19 100.5 202 30.7
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 4.8e-18 95.5 204 29.4
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.2e-16 90.9 59 72.9
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.7e-16 89.7 57 77.2
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.4e-12 77.4 70 47.1
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 2.5e-06 56.6 112 30.4
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.3e-06 55.8 49 49.0


User provided reference genes

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