Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 0.0e+00 1371.7 698 100.0
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 0.0e+00 1347.8 695 98.4
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 0.0e+00 1342.0 696 98.0
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 4.8e-230 801.6 724 61.5
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 2.2e-227 792.7 735 59.3
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 8.3e-222 774.2 731 58.1
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 1.4e-221 773.5 733 58.0
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 5.3e-221 771.5 728 58.2
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 9.1e-221 770.8 739 58.6
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 2.7e-220 769.2 733 58.8
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 7.7e-220 767.7 739 58.2
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 5.0e-219 765.0 737 58.1
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 8.5e-219 764.2 698 60.3
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 1.1e-218 763.8 731 58.3
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 1.6e-217 760.0 737 57.4
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 4.7e-217 758.4 730 59.0
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 1.0e-216 757.3 737 56.9
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.0e-216 757.3 737 57.8
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.8e-216 756.5 737 58.1
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 4.0e-216 755.4 737 57.7
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 5.2e-216 755.0 731 58.1
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 5.2e-216 755.0 737 57.5
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 1.5e-215 753.4 731 57.2
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 2.0e-215 753.1 733 57.0
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 2.6e-215 752.7 738 57.2
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 9.8e-215 750.7 741 56.1
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 1.3e-214 750.4 736 56.9
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 6.3e-214 748.0 731 57.2
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 8.3e-214 747.7 731 57.2
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 1.2e-212 743.8 732 56.4
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 7.7e-212 741.1 731 56.9
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 2.9e-211 739.2 738 57.0
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 2.9e-211 739.2 729 56.7
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 3.8e-211 738.8 730 56.7
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 1.6e-209 733.4 731 56.0
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.0e-208 730.7 737 56.7
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 1.4e-208 730.3 732 56.3
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 3.0e-208 729.2 713 57.6
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 5.2e-208 728.4 732 56.1
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 1.2e-207 727.2 731 55.8
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 2.0e-207 726.5 727 54.7
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 2.0e-207 726.5 735 55.1
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 2.0e-207 726.5 731 56.1
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 2.6e-207 726.1 730 56.0
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 4.4e-207 725.3 732 54.9
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 4.4e-207 725.3 734 55.2
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 4.4e-207 725.3 731 55.8
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 1.3e-206 723.8 728 54.8
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 1.3e-206 723.8 735 55.8
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 1.7e-206 723.4 718 56.3
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 4.9e-206 721.8 730 55.9
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 6.3e-206 721.5 731 55.0
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 1.1e-205 720.7 728 54.5
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 1.1e-205 720.7 713 57.1
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 1.8e-205 719.9 732 55.5
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 2.4e-205 719.5 734 54.8
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.1e-205 718.8 732 54.4
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.1e-205 718.8 732 54.4
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 7.0e-205 718.0 748 53.7
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 3.5e-204 715.7 732 54.5
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 4.5e-204 715.3 736 54.8
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 7.8e-204 714.5 736 54.5
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.3e-203 713.0 757 53.9
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 3.9e-203 712.2 739 53.9
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 6.6e-203 711.4 730 55.9
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 8.6e-203 711.1 730 54.2
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 2.5e-202 709.5 732 54.8
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.5e-202 709.5 753 54.3
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 4.3e-202 708.8 751 54.1
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 4.3e-202 708.8 731 54.2
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 5.6e-202 708.4 736 54.2
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 2.8e-201 706.1 734 54.5
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 8.0e-201 704.5 733 54.4
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 1.0e-200 704.1 726 55.0
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 8.9e-200 701.0 733 54.3
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.2e-199 700.7 710 54.8
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 3.4e-199 699.1 734 54.1
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 9.8e-199 697.6 732 54.1
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.7e-198 696.8 725 54.3
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 2.2e-198 696.4 733 54.7
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 4.9e-198 695.3 731 53.4
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 4.9e-198 695.3 735 53.7
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 1.1e-197 694.1 731 54.0
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 1.9e-197 693.3 735 54.6
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 1.9e-197 693.3 732 55.1
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 3.2e-197 692.6 746 53.2
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 4.1e-197 692.2 723 53.9
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 4.1e-197 692.2 747 53.7
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 7.0e-197 691.4 723 53.9
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 1.2e-196 690.6 755 53.2
PSO063G3671 Papaver somniferum HOM05D004428 ORTHO05D006381 1.2e-196 690.6 444 82.0
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 1.6e-196 690.3 725 54.1
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 6.0e-196 688.3 743 54.0
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 1.3e-195 687.2 743 52.4
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 1.3e-195 687.2 787 50.8
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.7e-195 686.8 759 53.0
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 6.6e-195 684.9 744 52.6
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 3.3e-194 682.6 736 53.5
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 4.3e-194 682.2 724 53.5
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 2.6e-191 672.9 734 52.0
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 3.4e-191 672.5 732 52.7
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 3.4e-191 672.5 591 62.4
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 8.3e-190 667.9 729 52.5
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 4.6e-188 662.1 788 50.3
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 3.9e-187 659.1 825 49.1
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 2.5e-186 656.4 737 52.0
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 6.2e-185 651.7 676 53.4
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 5.2e-184 648.7 728 51.4
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 5.2e-184 648.7 733 51.2
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 3.7e-182 642.5 733 52.7
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 3.2e-181 639.4 732 52.9
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 1.4e-176 624.0 753 50.9
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 1.8e-176 623.6 735 49.4
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 4.4e-175 619.0 732 51.1
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 1.5e-170 604.0 743 49.0
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 7.6e-167 591.7 653 50.7
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 2.9e-166 589.7 735 47.5
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 1.1e-165 587.8 737 49.7
CDE05G2974 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 3.2e-157 559.7 612 51.8
PSO339G3255 Papaver somniferum HOM05D004428 ORTHO05D006381 8.4e-150 535.0 337 82.5
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 3.3e-146 523.1 669 45.9
Pp3c2_14060 Physcomitrium patens HOM05D004428 ORTHO05D006381 5.1e-139 499.2 753 41.2
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 4.6e-132 476.1 595 48.2
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 2.5e-130 470.3 602 48.3
SMO307G0074 Selaginella moellendorffii HOM05D004428 ORTHO05D006381 2.0e-127 460.7 731 40.4
Mapoly0119s0018 Marchantia polymorpha HOM05D004428 ORTHO05D006381 2.2e-126 457.2 759 37.7
AagrBONN_evm.TU.Sc2ySwM_344.4958 Anthoceros agrestis HOM05D004428 ORTHO05D006381 1.4e-123 448.0 783 37.8
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 3.9e-123 446.4 835 38.0
CANSAT56G1871 Cannabis sativa HOM05D004428 ORTHO05D006381 3.6e-108 396.7 465 50.5
CBR_g46902 Chara braunii HOM05D004428 ORTHO05D006381 5.4e-104 382.9 860 33.3
Haze_22769 Corylus avellana HOM05D004428 ORTHO05D006381 3.5e-95 353.6 252 68.7
CDE05G2001 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.9e-93 347.8 622 39.7
Aa31LG5G19860 Aethionema arabicum HOM05D004428 ORTHO05D006381 1.3e-89 335.1 309 53.7
COL.COLO4_23022 Corchorus olitorius HOM05D004428 ORTHO05D006381 2.5e-69 267.7 246 57.3
Cre16.g673700 Chlamydomonas reinhardtii HOM05D004428 ORTHO05D006381 3.1e-67 260.8 849 28.0
MCO01G609 Micromonas commoda HOM05D004428 ORTHO05D006381 7.1e-64 249.6 540 33.1
BcaB04g17056 Brassica carinata HOM05D004428 ORTHO05D006381 3.0e-62 244.2 309 45.0
PRCOL_00005736 Prasinoderma coloniale HOM05D004428 ORTHO05D006381 3.3e-61 240.7 858 28.1
Glyma.20G030400 Glycine max HOM05D004428 ORTHO05D035991 4.3e-53 213.8 168 61.3
BcaB04g17057 Brassica carinata HOM05D004428 ORTHO05D006381 8.1e-44 183.0 237 47.7
Zm00001eb107630 Zea mays HOM05D004428 ORTHO05D035991 4.6e-31 140.6 106 67.9
Cfa025316 Carpinus fangiana HOM05D004428 ORTHO05D006381 3.0e-30 137.9 786 23.3
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 1.1e-27 129.4 339 35.4
Dinv39586 Davidia involucrata HOM05D004428 ORTHO05D006381 8.5e-25 119.8 120 60.8
TPR.G38192 Trifolium pratense HOM05D004428 ORTHO05D048467 2.5e-24 118.2 112 50.9
Aa31LG5G19870 Aethionema arabicum HOM05D004428 ORTHO05D017237 2.5e-21 108.2 137 48.9
Zm00001eb287390 Zea mays HOM05D004428 ORTHO05D035991 5.3e-19 100.5 77 66.2
vmacro21817 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 2.7e-15 88.2 99 48.5
Cre10.g445600 Chlamydomonas reinhardtii HOM05D002230 ORTHO05D002441 1.0e-14 86.3 199 28.1
Sed0010811 Sechium edule HOM05D002230 ORTHO05D002441 8.8e-14 83.2 206 26.2
MELO3C013185.2 Cucumis melo HOM05D002230 ORTHO05D002441 2.6e-13 81.6 207 26.1
Pp3c13_14960 Physcomitrium patens HOM05D002230 ORTHO05D002441 2.6e-13 81.6 309 24.9
Mapoly0040s0120 Marchantia polymorpha HOM05D002230 ORTHO05D002441 7.4e-13 80.1 197 25.9
ClCG09G010650 Citrullus lanatus HOM05D002230 ORTHO05D002441 9.7e-13 79.7 207 25.6
QL03p066506 Quercus lobata HOM05D002230 ORTHO05D002441 6.3e-12 77.0 197 22.3
Os03g0333100 Oryza sativa ssp. japonica HOM05D002230 ORTHO05D002441 1.1e-11 76.3 193 25.9
Cpa.g.sc9.331 Carica papaya HOM05D002230 ORTHO05D002441 4.1e-11 74.3 193 23.8
CsaV3_7G021630 Cucumis sativus L. HOM05D002230 ORTHO05D002441 3.4e-10 71.2 362 23.5
Zm00001eb015920 Zea mays HOM05D002230 ORTHO05D002441 7.7e-10 70.1 329 24.0
Sed0001302 Sechium edule HOM05D002230 ORTHO05D002441 1.3e-09 69.3 365 22.7
Zm00001eb044510 Zea mays HOM05D004428 ORTHO05D445129 1.1e-08 66.2 81 46.9
Lj2g0023471 Lotus japonicus HOM05D004428 ORTHO05D048467 1.4e-08 65.9 54 53.7
Sp5g18200 Schrenkiella parvula HOM05D007948 ORTHO05D006374 4.2e-08 64.3 87 46.0
ClCG09G009700 Citrullus lanatus HOM05D002230 ORTHO05D002441 3.0e-06 58.2 334 24.9
Lsat_1_v5_gn_6_31421 Lactuca sativa HOM05D002230 ORTHO05D002441 3.0e-06 58.2 342 21.1
HPP92_015122 Vanilla planifolia HOM05D002230 ORTHO05D002441 3.9e-06 57.8 336 23.8
Sabra17G0004300 Salix brachista HOM05D002230 ORTHO05D002441 5.2e-06 57.4 574 20.6


User provided reference genes

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