Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.2e-135 486.5 245 100.0
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.3e-126 456.4 245 91.4
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 1.9e-125 452.6 245 91.0
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.5e-109 399.8 242 78.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 3.1e-107 392.1 244 78.3
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 4.0e-107 391.7 243 77.4
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 5.3e-107 391.3 243 77.0
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.9e-107 391.0 243 77.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.5e-106 389.8 243 78.2
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.5e-106 389.8 241 76.8
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.6e-106 389.0 241 78.0
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 4.5e-106 388.3 243 76.1
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 3.8e-105 385.2 243 77.0
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 4.9e-105 384.8 243 76.1
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.9e-105 384.8 243 76.1
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.9e-105 384.8 243 76.1
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.9e-105 384.8 243 76.5
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.5e-105 384.4 243 76.1
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.9e-104 382.9 243 76.1
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 5.5e-104 381.3 243 76.1
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 7.1e-104 380.9 244 75.4
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 9.3e-104 380.6 243 74.9
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 9.3e-104 380.6 243 75.7
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.2e-103 380.2 242 76.0
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.2e-103 380.2 243 75.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.2e-103 380.2 243 74.9
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.7e-103 379.0 241 75.1
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 6.0e-103 377.9 243 77.4
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 6.0e-103 377.9 240 76.7
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 6.0e-103 377.9 243 74.9
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 7.9e-103 377.5 243 76.1
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.0e-102 377.1 243 73.3
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.3e-102 376.7 241 76.3
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.3e-102 376.7 243 74.5
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.3e-102 375.9 244 75.4
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 3.0e-102 375.6 243 74.1
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.0e-102 375.6 243 74.9
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 3.0e-102 375.6 243 73.7
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.9e-102 375.2 240 75.0
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 5.1e-102 374.8 246 76.0
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 6.7e-102 374.4 244 74.2
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 6.7e-102 374.4 243 73.3
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.5e-101 373.2 243 74.1
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.5e-101 373.2 244 75.0
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 1.5e-101 373.2 244 75.0
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.9e-101 372.9 241 74.7
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.9e-101 372.9 240 75.8
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.9e-101 372.9 243 74.9
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.9e-101 372.9 243 73.7
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.9e-101 372.9 243 74.1
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 2.5e-101 372.5 240 74.2
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.5e-101 372.5 240 74.2
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.5e-101 372.5 240 74.2
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.5e-101 372.5 243 73.7
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.5e-101 372.5 243 74.5
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 3.3e-101 372.1 244 75.8
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 4.3e-101 371.7 244 74.6
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 4.3e-101 371.7 243 72.4
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 4.3e-101 371.7 243 73.7
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 5.7e-101 371.3 240 75.0
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 5.7e-101 371.3 244 75.0
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 7.4e-101 370.9 243 72.4
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 7.4e-101 370.9 245 73.5
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 7.4e-101 370.9 243 75.7
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 9.6e-101 370.5 244 73.0
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.3e-100 370.2 244 74.6
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.6e-100 369.8 241 73.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.6e-100 369.8 243 73.7
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.7e-100 368.6 240 73.3
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 3.7e-100 368.6 240 73.3
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 6.3e-100 367.9 243 73.3
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 8.2e-100 367.5 240 73.8
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.1e-99 367.1 240 74.2
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 1.1e-99 367.1 240 74.6
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.4e-99 366.7 244 73.8
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.8e-99 366.3 243 72.8
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.8e-99 366.3 243 72.4
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.4e-99 365.9 241 72.6
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.4e-99 365.9 245 72.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 2.4e-99 365.9 275 67.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 5.3e-99 364.8 244 73.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 9.0e-99 364.0 245 71.8
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.6e-98 362.5 244 73.0
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.6e-98 362.5 240 73.8
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.4e-98 362.1 244 73.8
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 4.5e-98 361.7 243 72.0
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.9e-98 361.3 240 73.3
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 5.9e-98 361.3 243 72.0
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 7.6e-98 360.9 241 72.2
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.0e-97 360.5 241 71.8
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.2e-97 359.4 243 71.2
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 5.0e-97 358.2 244 71.3
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 5.0e-97 358.2 244 72.5
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 5.0e-97 358.2 243 72.4
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.5e-97 357.5 243 72.0
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.1e-96 357.1 243 71.6
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.9e-96 356.3 240 71.7
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.9e-96 356.3 243 71.2
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.9e-96 356.3 243 71.6
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.9e-96 356.3 243 71.6
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.9e-96 356.3 241 71.8
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 5.5e-96 354.8 244 71.3
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 5.5e-96 354.8 244 71.3
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.2e-96 354.4 243 71.2
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 7.2e-96 354.4 308 60.7
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 9.3e-96 354.0 240 70.4
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.2e-95 353.6 243 71.2
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.2e-95 353.6 286 62.2
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.6e-95 353.2 243 71.6
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.6e-95 353.2 243 70.4
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.7e-95 352.4 243 70.8
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 4.6e-95 351.7 243 70.4
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 8.7e-94 347.4 244 69.3
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 4.3e-93 345.1 231 74.5
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.0e-90 336.3 218 73.4
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 5.0e-89 331.6 339 53.1
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 7.2e-88 327.8 293 59.0
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 9.4e-88 327.4 240 67.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 4.6e-87 325.1 206 75.2
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 5.7e-85 318.2 246 64.2
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.3e-84 317.0 260 60.8
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 3.1e-83 312.4 242 63.2
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 6.9e-83 311.2 241 62.2
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 3.9e-78 295.4 245 59.6
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 5.7e-77 291.6 245 59.2
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 3.7e-76 288.9 241 58.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.1e-75 285.4 181 76.2
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.3e-69 265.8 158 82.3
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 1.7e-65 253.4 161 76.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 4.2e-64 248.8 159 74.8
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.1e-59 232.6 161 72.0
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.4e-53 212.2 183 60.1
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 4.0e-46 189.1 113 80.5
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 1.3e-44 184.1 250 43.6
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.7e-41 173.7 246 45.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 8.6e-41 171.4 259 38.2
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 3.7e-36 156.0 216 42.6
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.1e-35 154.5 125 60.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 2.0e-29 133.7 79 77.2
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 2.4e-27 126.7 137 50.4
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.2e-26 124.4 86 65.1
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.3e-25 120.9 113 55.8
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 8.6e-25 118.2 84 61.9
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 2.2e-20 103.6 87 59.8
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 2.2e-20 103.6 87 59.8
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.4e-19 100.9 83 59.0
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.4e-19 100.9 81 63.0
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.2e-19 99.8 90 53.3
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 1.6e-18 97.4 87 58.6
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.9e-16 90.5 73 54.8
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.3e-12 77.8 112 44.6
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.3e-12 77.8 59 61.0
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 1.7e-12 77.4 112 43.8
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 4.6e-10 69.3 90 44.4
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 1.7e-09 67.4 124 37.1
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 8.1e-07 58.5 124 36.3


User provided reference genes

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