Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 6.4e-210 733.8 360 100.0
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 2.5e-206 721.8 360 98.3
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 2.3e-175 619.0 348 83.3
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 8.7e-175 617.1 349 84.0
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 3.5e-168 595.1 350 80.6
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 2.3e-167 592.4 350 80.3
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 8.7e-167 590.5 349 80.2
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.1e-166 590.1 345 80.9
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.1e-166 590.1 346 81.8
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 1.5e-166 589.7 349 80.2
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 9.6e-166 587.0 348 79.3
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 9.6e-166 587.0 349 79.9
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 6.2e-165 584.3 350 78.3
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.4e-164 583.2 346 78.6
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 3.1e-164 582.0 352 78.1
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 5.3e-164 581.3 346 79.5
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 9.0e-164 580.5 351 78.1
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 9.0e-164 580.5 346 79.5
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 2.6e-163 578.9 348 78.7
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 3.4e-163 578.6 346 79.2
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 4.5e-163 578.2 349 78.5
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 5.8e-163 577.8 346 78.0
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 5.8e-163 577.8 351 78.1
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 5.8e-163 577.8 346 78.3
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 7.6e-163 577.4 350 78.9
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 1.0e-162 577.0 349 78.5
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.3e-162 576.6 349 78.5
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.3e-162 576.6 351 78.3
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.7e-162 576.2 351 78.1
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.2e-162 575.9 351 78.1
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 1.4e-161 573.2 349 78.2
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 3.2e-161 572.0 346 78.3
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 4.2e-161 571.6 349 77.4
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 4.2e-161 571.6 349 77.4
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 5.5e-161 571.2 351 76.4
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 5.5e-161 571.2 349 76.8
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 7.1e-161 570.9 346 77.7
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 1.2e-160 570.1 349 76.2
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 1.2e-160 570.1 349 77.7
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 2.1e-160 569.3 350 76.9
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 2.1e-160 569.3 351 76.1
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 2.7e-160 568.9 349 76.5
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 3.5e-160 568.5 345 77.1
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 3.5e-160 568.5 350 76.0
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 6.1e-160 567.8 346 76.6
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 6.1e-160 567.8 349 77.1
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 7.9e-160 567.4 349 76.5
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.0e-159 567.0 346 76.9
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 6.7e-159 564.3 352 78.1
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 6.7e-159 564.3 346 77.7
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 6.7e-159 564.3 346 78.9
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 6.7e-159 564.3 349 76.5
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 1.5e-158 563.1 351 75.2
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 1.5e-158 563.1 350 75.1
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 1.5e-158 563.1 348 75.0
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.9e-158 562.8 363 74.4
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.5e-158 562.4 346 77.5
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.5e-158 562.4 349 75.6
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 3.3e-158 562.0 351 74.9
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 3.3e-158 562.0 350 76.0
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 9.7e-158 560.5 351 74.9
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 9.7e-158 560.5 342 76.6
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.3e-157 560.1 351 76.4
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 1.6e-157 559.7 351 74.6
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.6e-157 559.7 351 75.2
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 2.8e-157 558.9 346 75.7
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 4.8e-157 558.1 351 74.4
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 4.8e-157 558.1 349 73.6
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 4.8e-157 558.1 349 74.2
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 8.2e-157 557.4 341 78.0
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.1e-156 557.0 349 75.4
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 5.3e-156 554.7 351 74.1
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 5.3e-156 554.7 349 75.4
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.5e-155 553.1 351 75.2
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 2.0e-155 552.7 346 76.3
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 2.6e-155 552.4 349 74.2
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 3.4e-155 552.0 347 76.7
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 7.7e-155 550.8 354 73.4
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 2.9e-154 548.9 346 74.3
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 6.5e-154 547.7 327 78.3
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.4e-153 546.6 351 73.2
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 2.5e-153 545.8 383 71.3
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 4.2e-153 545.0 346 73.7
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 7.2e-153 544.3 350 74.3
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 9.4e-153 543.9 356 72.5
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.6e-152 543.1 347 73.8
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 3.6e-152 542.0 347 73.5
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 4.6e-152 541.6 352 73.3
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 4.6e-152 541.6 352 73.3
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 1.0e-151 540.4 350 71.1
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 1.0e-151 540.4 352 72.2
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 3.9e-151 538.5 349 72.8
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 3.9e-151 538.5 343 75.5
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 2.0e-150 536.2 346 75.1
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 7.4e-150 534.3 350 72.6
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 9.7e-150 533.9 368 71.2
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 9.7e-150 533.9 352 70.7
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 3.1e-148 528.9 352 71.6
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 4.1e-148 528.5 350 72.6
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 1.2e-147 526.9 343 72.9
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 3.2e-145 518.8 346 70.5
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 5.5e-145 518.1 390 65.1
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 6.7e-143 511.1 351 70.1
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 1.5e-142 510.0 345 71.6
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 3.1e-140 502.3 350 70.3
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 2.6e-139 499.2 319 74.9
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.0e-138 497.3 344 68.6
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 1.5e-137 493.4 356 68.8
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 6.7e-135 484.6 346 69.1
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 2.6e-131 472.6 284 77.8
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 4.7e-128 461.8 272 80.9
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 2.2e-125 453.0 329 63.8
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 2.8e-125 452.6 349 62.2
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 1.1e-124 450.7 271 78.2
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.2e-123 447.2 350 63.4
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 3.5e-123 445.7 268 77.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 6.1e-120 434.9 269 75.1
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.2e-118 430.6 268 76.9
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 6.3e-117 424.9 268 75.4
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 3.4e-110 402.5 291 64.6
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 5.7e-110 401.7 344 58.1
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.3e-109 400.6 340 58.2
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 4.9e-109 398.7 336 61.3
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 5.9e-107 391.7 235 79.6
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.3e-106 390.6 247 77.7
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 2.2e-101 373.2 276 66.7
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 7.0e-100 368.2 272 62.9
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 2.3e-95 353.2 349 53.3
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 8.9e-95 351.3 358 53.4
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 8.3e-93 344.7 210 78.6
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 3.9e-90 335.9 350 51.7
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 4.7e-88 328.9 350 52.0
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 1.7e-82 310.5 343 49.3
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 3.6e-80 302.8 350 46.0
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 9.3e-76 288.1 234 63.2
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 2.6e-70 270.0 209 66.5
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 4.3e-65 252.7 215 60.9
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 1.1e-63 248.1 161 70.8
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 7.6e-54 215.3 130 77.7
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 1.0e-53 214.9 197 56.3
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 1.4e-47 194.5 115 77.4
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 4.5e-38 162.9 113 68.1
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 2.5e-28 130.6 190 41.6
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 6.3e-24 115.9 70 75.7
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 7.0e-23 112.5 67 73.1
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 7.2e-20 102.4 68 64.7
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 1.1e-17 95.1 67 62.7
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 5.2e-10 69.7 44 68.2
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 3.4e-09 67.0 43 65.1
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 4.1e-07 60.1 81 43.2
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 1.6e-06 58.2 232 24.1
CAN.G1057.11 Capsicum annuum HOM05D004929 ORTHO05D115892 4.5e-06 56.6 108 32.4


User provided reference genes

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