Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 0.0e+00 2350.5 1225 100.0
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 0.0e+00 1225.3 1333 52.4
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 0.0e+00 1194.5 1302 50.9
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 1.3e-302 1043.5 1264 47.3
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 3.5e-300 1035.4 1285 46.5
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 4.3e-298 1028.5 1269 46.7
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 1.5e-295 1020.0 1280 46.4
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 4.9e-294 1015.0 1271 46.7
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 1.6e-289 1000.0 1265 44.9
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 8.9e-288 994.2 1265 45.5
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 2.7e-284 982.6 1257 45.3
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 3.5e-284 982.2 1256 45.0
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 6.0e-284 981.5 837 59.3
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 8.6e-283 977.6 1280 44.8
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 1.6e-281 973.4 1268 45.1
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 3.1e-280 969.1 1259 45.1
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 9.6e-274 947.6 1264 43.5
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 8.7e-267 924.5 960 51.2
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 6.9e-264 914.8 1135 45.0
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 9.0e-264 914.4 969 50.2
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 3.2e-261 906.0 818 55.0
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.6e-260 903.7 1300 41.8
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 3.5e-260 902.5 846 54.1
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 1.5e-258 897.1 1275 43.1
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.9e-250 870.2 1065 46.8
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 3.3e-250 869.4 1111 43.9
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 1.6e-249 867.1 1243 41.8
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 3.4e-247 859.4 1249 41.2
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 3.3e-242 842.8 1301 40.6
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 5.9e-239 832.0 1206 40.9
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 2.2e-238 830.1 1261 40.4
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 2.8e-233 813.1 1227 40.7
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 3.1e-232 809.7 1324 39.0
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 3.1e-232 809.7 823 51.0
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 1.7e-230 803.9 823 50.9
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.1e-229 801.2 829 49.8
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 1.9e-229 800.4 1272 39.4
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.6e-228 797.3 855 49.2
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 7.4e-226 788.5 1054 43.4
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 1.5e-223 780.8 1230 39.0
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 1.0e-222 778.1 1235 39.8
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 2.9e-222 776.5 1267 37.9
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 6.5e-222 775.4 1257 39.1
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 2.5e-221 773.5 1278 38.4
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 4.7e-220 769.2 944 45.2
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 7.9e-220 768.5 1054 42.7
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 3.0e-219 766.5 1180 39.0
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 2.6e-218 763.5 947 45.5
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 3.3e-218 763.1 1149 41.1
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 2.0e-215 753.8 960 44.7
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 2.6e-215 753.4 1003 44.9
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 3.6e-212 743.0 1184 40.0
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 8.0e-212 741.9 959 42.3
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 3.7e-209 733.0 1264 37.2
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.4e-208 731.1 817 48.3
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 2.4e-208 730.3 717 52.4
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 4.1e-208 729.6 819 48.1
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 4.5e-207 726.1 1223 37.9
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 2.4e-200 703.7 818 47.4
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.4e-195 688.0 1256 35.9
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 7.5e-194 682.2 857 44.6
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 2.9e-185 653.7 1194 36.1
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 8.6e-182 642.1 879 41.5
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 1.9e-181 641.0 639 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 1.6e-175 621.3 850 41.3
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 5.0e-174 616.3 864 42.8
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 2.1e-172 610.9 837 39.4
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.4e-168 598.2 840 41.5
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 2.2e-161 574.3 795 39.1
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 4.9e-161 573.2 960 38.2
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.1e-157 562.0 690 45.4
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 1.1e-155 555.4 1126 35.3
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 4.3e-149 533.5 493 55.6
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.5e-141 508.4 858 38.5
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.9e-136 491.5 507 48.7
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 2.5e-117 427.9 433 52.7
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 2.2e-76 292.0 382 42.1
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 2.5e-72 278.5 805 26.7
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 4.0e-70 271.2 962 26.3
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 2.9e-68 265.0 640 31.2
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 4.3e-56 224.6 470 34.0
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 5.6e-48 197.6 596 31.0
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 9.5e-48 196.8 238 45.8
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 1.2e-47 196.4 192 53.1
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.4e-46 193.0 238 45.0
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 1.5e-45 189.5 238 44.5
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 1.7e-41 176.0 572 25.5
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 4.3e-32 144.8 239 40.2
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.3e-32 144.8 106 65.1
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 2.4e-30 139.0 175 43.4
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 2.9e-28 132.1 107 58.9
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 1.9e-27 129.4 670 23.6
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 3.2e-19 102.1 59 71.2
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 3.5e-18 98.6 85 60.0
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 4.6e-18 98.2 86 60.5
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 2.3e-17 95.9 88 56.8
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 8.7e-17 94.0 88 60.2
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 4.3e-16 91.7 372 26.1
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 1.0e-12 80.5 339 25.1
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.7e-12 79.7 691 21.3
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 5.5e-11 74.7 81 48.1
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 7.9e-10 70.9 66 53.0
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 1.0e-09 70.5 615 21.6
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 2.5e-08 65.9 246 32.1
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 5.7e-08 64.7 197 29.9
Cre12.g489750 Chlamydomonas reinhardtii HOM05D015011 ORTHO05D017325 9.7e-08 63.9 322 21.4
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 9.7e-08 63.9 116 33.6
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 2.2e-07 62.8 151 29.8
Cre01.g010880 Chlamydomonas reinhardtii HOM05D009332 ORTHO05D011893 4.8e-07 61.6 180 27.2
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 3.1e-06 58.9 287 25.8
AagrBONN_evm.TU.Sc2ySwM_228.2040 Anthoceros agrestis HOM05D015011 ORTHO05D017325 4.1e-06 58.5 277 23.1
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 4.1e-06 58.5 147 27.2
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 4.1e-06 58.5 167 25.1
Medtr3g449990 Medicago truncatula HOM05D001610 ORTHO05D001585 5.3e-06 58.2 194 22.2
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 5.3e-06 58.2 68 48.5
Ciclev10004724m.g Citrus clementina HOM05D003335 ORTHO05D003853 6.9e-06 57.8 207 24.6


User provided reference genes

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