Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 1.4e-141 506.1 239 100.0
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 8.0e-92 340.9 224 74.1
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 2.7e-79 299.3 222 62.2
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 1.3e-78 297.0 222 63.1
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-78 296.2 222 62.6
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 6.1e-76 288.1 222 61.7
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 6.1e-76 288.1 222 61.7
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 7.8e-63 244.6 185 62.7
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 8.6e-62 241.1 224 52.2
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 4.4e-58 228.8 223 48.9
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 3.7e-57 225.7 222 48.6
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 2.1e-55 219.9 223 47.5
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 2.7e-55 219.5 222 45.5
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 3.5e-55 219.2 235 46.0
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.5e-55 219.2 215 47.4
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 4.6e-55 218.8 222 47.7
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.6e-55 218.8 222 45.0
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.3e-54 217.2 213 51.2
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.7e-54 216.9 222 45.0
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 2.3e-54 216.5 222 44.6
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.1e-53 214.2 224 46.4
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.5e-53 213.8 219 46.1
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 2.5e-53 213.0 225 48.0
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 4.3e-53 212.2 221 47.5
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 5.6e-53 211.8 223 46.2
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 5.6e-53 211.8 218 47.2
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 7.3e-53 211.5 223 44.8
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.1e-52 209.9 224 44.2
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.1e-52 209.9 222 43.7
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 2.8e-52 209.5 226 44.7
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 3.6e-52 209.1 224 45.5
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 6.2e-52 208.4 222 45.0
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 8.1e-52 208.0 212 46.7
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.1e-51 207.6 223 45.3
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.4e-51 207.2 250 41.6
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 3.1e-51 206.1 219 47.0
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.1e-51 206.1 215 46.0
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 5.2e-51 205.3 212 46.7
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.2e-51 205.3 236 44.1
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 6.8e-51 204.9 222 43.7
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 8.9e-51 204.5 227 43.6
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 8.9e-51 204.5 222 44.1
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-50 203.8 224 47.3
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.4e-50 202.6 222 43.7
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 4.4e-50 202.2 235 43.8
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 4.9e-49 198.7 223 43.9
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 6.4e-49 198.4 222 42.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 8.4e-49 198.0 222 46.8
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.9e-48 196.8 224 43.8
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.4e-48 196.4 211 45.0
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.2e-48 196.1 222 40.1
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 5.4e-48 195.3 229 41.9
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 9.2e-48 194.5 216 44.0
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 1.6e-47 193.7 212 45.3
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-47 193.7 218 40.4
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.1e-47 193.4 239 42.3
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 3.5e-47 192.6 224 46.0
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.6e-47 192.2 223 43.5
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 6.0e-47 191.8 227 41.0
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.8e-47 191.4 218 39.9
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.0e-46 191.0 213 44.1
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.0e-46 191.0 222 42.8
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.7e-46 190.3 229 42.8
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 1.7e-46 190.3 171 48.5
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 2.3e-46 189.9 223 43.0
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.3e-46 189.9 213 43.7
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 3.0e-46 189.5 236 42.4
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.9e-46 189.1 218 39.4
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 5.1e-46 188.7 222 43.7
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 5.1e-46 188.7 223 43.0
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 6.6e-46 188.3 250 40.0
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 6.6e-46 188.3 242 39.7
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 8.7e-46 188.0 226 41.6
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.5e-45 187.2 223 41.7
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.9e-45 186.8 187 47.1
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.5e-45 186.4 224 43.8
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 3.3e-45 186.0 216 43.1
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 3.3e-45 186.0 227 41.4
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 5.6e-45 185.3 230 41.3
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 5.6e-45 185.3 244 38.5
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 9.6e-45 184.5 230 41.3
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.2e-44 184.1 222 42.3
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.2e-44 184.1 178 50.0
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.2e-44 184.1 245 38.4
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 1.2e-44 184.1 216 42.6
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.2e-44 184.1 214 40.7
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.2e-44 184.1 214 45.8
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 2.1e-44 183.3 223 43.9
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.4e-43 180.6 171 48.0
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.0e-42 176.8 215 41.4
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 2.0e-42 176.8 215 41.4
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.0e-42 176.8 215 41.4
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 2.0e-42 176.8 224 43.3
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 2.0e-42 176.8 228 39.9
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.6e-42 176.4 229 40.6
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.6e-42 176.4 167 47.3
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 4.4e-42 175.6 256 36.7
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 7.6e-42 174.9 222 41.0
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 7.6e-42 174.9 200 44.0
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.2e-41 173.3 171 45.0
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 3.8e-41 172.6 216 41.7
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 3.8e-41 172.6 216 41.7
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 4.9e-41 172.2 217 41.0
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 1.4e-40 170.6 219 37.4
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.4e-40 170.6 220 40.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 1.9e-40 170.2 220 41.8
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.2e-40 169.5 195 42.1
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 4.2e-40 169.1 218 39.9
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 9.3e-40 167.9 212 39.6
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 2.1e-39 166.8 221 42.1
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 2.7e-39 166.4 228 39.5
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 3.5e-39 166.0 214 38.3
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 3.5e-39 166.0 228 39.0
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 4.6e-39 165.6 219 39.7
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 6.0e-39 165.2 222 39.6
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 7.8e-39 164.9 214 42.1
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.8e-39 164.9 211 41.7
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.0e-38 164.5 237 40.5
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 3.9e-38 162.5 224 39.7
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 6.6e-38 161.8 225 42.2
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 8.7e-38 161.4 223 37.7
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 3.3e-37 159.5 222 37.8
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 3.3e-37 159.5 221 40.3
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 9.6e-37 157.9 160 46.2
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 4.8e-36 155.6 185 42.2
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.8e-36 155.6 181 43.6
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.4e-33 144.8 192 40.1
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 8.4e-33 144.8 200 41.0
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 8.4e-33 144.8 225 35.6
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 2.1e-31 140.2 222 32.4
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 6.7e-30 135.2 224 37.1
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.6e-26 123.2 128 43.8
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 3.3e-21 106.3 214 31.3
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 2.8e-20 103.2 229 31.9
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 4.0e-19 99.4 112 42.9
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 6.9e-19 98.6 157 39.5
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 3.4e-18 96.3 244 30.7
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.4e-17 91.7 239 28.9
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 7.9e-15 85.1 240 27.5
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.3e-14 84.3 209 28.2
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.3e-14 84.3 240 28.3
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 3.0e-14 83.2 207 28.5
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 5.1e-14 82.4 118 40.7
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 7.4e-13 78.6 106 38.7
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 1.6e-12 77.4 103 35.9
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.8e-12 76.6 165 26.1
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 2.6e-10 70.1 220 29.1
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 5.9e-10 68.9 241 27.0
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 7.7e-10 68.6 246 26.8
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.7e-09 67.4 248 23.8
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.2e-07 61.2 235 24.3


User provided reference genes

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