Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.1e-117 425.6 207 100.0
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 3.6e-88 328.6 165 96.4
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-58 230.7 219 55.7
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 3.6e-56 222.2 220 55.0
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.4e-55 220.3 214 54.7
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 2.0e-54 216.5 220 55.0
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-49 199.9 165 60.6
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.0e-42 177.6 219 47.5
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.6e-40 169.1 220 46.4
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.0e-39 165.6 219 42.0
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 3.4e-38 162.5 221 44.8
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 2.2e-37 159.8 219 43.8
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 2.9e-37 159.5 219 43.4
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 4.9e-37 158.7 219 41.1
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 8.3e-37 157.9 219 43.4
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 8.3e-37 157.9 219 42.9
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.4e-36 157.1 219 41.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.9e-36 156.8 219 43.4
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.4e-36 156.4 219 42.5
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.4e-36 156.4 222 45.5
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.4e-36 156.4 219 43.8
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.4e-36 156.4 199 44.7
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 5.4e-36 155.2 218 42.2
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 5.4e-36 155.2 219 41.1
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 9.2e-36 154.5 224 41.1
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.2e-35 154.1 219 40.6
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 2.7e-35 152.9 219 40.6
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 3.5e-35 152.5 221 42.1
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.6e-35 152.1 221 43.0
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 6.0e-35 151.8 222 44.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.0e-35 151.8 221 42.5
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.0e-34 151.0 217 41.0
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.0e-34 151.0 219 41.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.0e-34 151.0 221 42.1
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.0e-34 151.0 219 41.6
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.3e-34 150.6 222 45.5
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.3e-34 150.6 221 41.2
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.7e-34 150.2 219 40.6
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.7e-34 150.2 219 42.5
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.3e-34 149.8 219 39.7
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.3e-34 149.8 228 42.5
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.0e-34 149.4 219 42.9
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 8.6e-34 147.9 222 40.5
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 8.6e-34 147.9 221 41.6
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.1e-33 147.5 219 42.0
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.5e-33 146.4 219 40.6
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.3e-33 146.0 221 42.1
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.3e-33 146.0 219 42.0
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.3e-33 145.6 218 42.7
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.6e-33 145.2 219 39.7
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 7.3e-33 144.8 220 41.4
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 9.5e-33 144.4 222 41.4
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.2e-32 144.1 219 40.6
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.6e-32 143.7 219 39.7
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.1e-32 143.3 219 40.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 2.8e-32 142.9 219 40.2
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 3.6e-32 142.5 219 41.6
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 3.6e-32 142.5 227 37.9
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.7e-32 142.1 199 43.7
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 8.0e-32 141.4 219 37.9
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 8.0e-32 141.4 219 39.3
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 8.0e-32 141.4 225 41.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.1e-31 141.0 218 41.7
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.4e-31 140.6 219 40.6
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.1e-31 139.4 220 39.5
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 4.0e-31 139.0 180 45.6
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 4.0e-31 139.0 219 41.1
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.5e-30 137.1 227 39.6
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.6e-30 136.3 208 39.4
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 3.4e-30 136.0 220 37.3
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 3.4e-30 136.0 216 38.0
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 3.4e-30 136.0 226 38.5
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 4.4e-30 135.6 219 38.4
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-29 134.0 226 38.5
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.2e-29 133.3 221 40.7
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 2.9e-29 132.9 221 39.4
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 2.9e-29 132.9 226 37.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.7e-29 132.5 219 37.9
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.7e-29 132.5 227 37.9
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 8.3e-29 131.3 227 37.9
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.4e-28 130.6 221 38.0
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.9e-28 130.2 219 39.7
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.9e-28 130.2 195 41.0
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.4e-28 129.8 241 34.9
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.4e-28 129.8 219 37.9
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.4e-28 128.6 221 39.4
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 5.4e-28 128.6 174 40.2
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 7.0e-28 128.3 220 39.5
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 9.2e-28 127.9 221 37.6
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 9.2e-28 127.9 195 39.5
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.2e-27 127.5 220 37.7
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.2e-27 127.5 199 39.2
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.2e-27 127.5 237 36.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.6e-27 127.1 222 37.4
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.1e-27 126.7 189 39.7
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 2.7e-27 126.3 220 39.1
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 2.7e-27 126.3 199 37.7
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.5e-27 125.9 197 43.1
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.6e-27 125.6 219 38.4
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.6e-27 125.6 219 38.4
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.6e-27 125.6 219 38.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.6e-27 125.6 217 37.8
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 4.6e-27 125.6 170 43.5
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 6.0e-27 125.2 224 37.9
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 6.0e-27 125.2 194 39.2
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 7.8e-27 124.8 217 37.3
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.0e-26 124.4 189 39.2
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.3e-26 124.0 220 37.7
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.3e-26 124.0 214 37.4
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.3e-26 124.0 221 37.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.3e-26 124.0 220 35.0
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-26 123.6 221 36.7
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.7e-26 123.6 221 37.6
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.3e-26 123.2 219 37.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.3e-26 123.2 219 37.0
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 3.0e-26 122.9 243 33.7
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.9e-26 122.5 194 39.7
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 6.6e-26 121.7 214 36.9
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.6e-26 121.7 168 41.1
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 8.6e-26 121.3 217 36.9
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.1e-25 120.9 219 37.4
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.9e-25 120.2 153 40.5
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.5e-25 119.8 243 34.2
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 2.5e-25 119.8 203 39.9
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.5e-25 119.8 223 35.0
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 3.3e-25 119.4 227 36.1
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 3.3e-25 119.4 206 40.3
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 4.3e-25 119.0 175 40.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 7.3e-25 118.2 266 32.0
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.3e-25 118.2 228 36.8
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 7.3e-25 118.2 152 45.4
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 9.5e-25 117.9 200 37.5
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 3.6e-24 115.9 223 35.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 3.6e-24 115.9 223 35.4
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 4.7e-24 115.5 223 34.5
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 4.7e-24 115.5 223 34.5
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 4.7e-24 115.5 220 34.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.1e-24 114.8 191 38.2
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.3e-23 113.2 182 37.9
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 8.9e-23 111.3 219 34.7
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.2e-22 110.9 172 40.1
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.6e-22 109.8 219 34.2
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 4.4e-22 109.0 238 31.1
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.9e-21 106.3 213 35.2
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 2.9e-21 106.3 190 34.7
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.9e-20 103.6 206 35.0
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.2e-19 100.9 226 33.6
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.7e-19 99.8 179 35.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.0e-19 98.6 214 36.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.0e-19 98.6 214 36.4
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-18 97.1 176 34.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 3.0e-18 96.3 235 31.1
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 7.3e-17 91.7 174 29.3
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.6e-16 89.4 216 29.6
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 4.7e-16 89.0 105 46.7
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.2e-15 85.5 110 44.5
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.5e-14 84.0 150 33.3
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.8e-14 82.0 170 32.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 4.9e-13 79.0 294 24.5
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 5.4e-12 75.5 154 32.5
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 9.2e-12 74.7 307 24.1
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 2.7e-11 73.2 207 32.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 7.8e-11 71.6 88 46.6
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 6.6e-10 68.6 79 41.8
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 9.6e-09 64.7 84 40.5
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 2.8e-08 63.2 87 37.9
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.1e-08 61.6 84 47.6
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.1e-07 59.7 71 45.1
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.2e-06 57.8 78 46.2
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.2e-06 57.8 89 41.6
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 7.6e-06 55.1 64 39.1


User provided reference genes

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