Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6139 Papaver somniferum HOM05D041942 ORTHO05D002441 9.6e-155 550.1 265 100.0
PSO170G5913 Papaver somniferum HOM05D041942 ORTHO05D002441 3.7e-154 548.1 265 99.6
PSO170G6601 Papaver somniferum HOM05D041942 ORTHO05D302896 5.9e-96 354.8 166 100.0
PSO170G0827 Papaver somniferum HOM05D002230 ORTHO05D002441 1.9e-38 163.7 81 100.0
PSO725G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 1.9e-38 163.7 81 100.0
PSO173G0158 Papaver somniferum HOM05D002230 ORTHO05D002441 2.8e-21 106.7 132 48.5
PSO173G0025 Papaver somniferum HOM05D002230 ORTHO05D002441 1.1e-20 104.8 132 47.7
PSO673G0035 Papaver somniferum HOM05D002230 ORTHO05D002441 1.2e-19 101.3 132 46.2
PSO455G0070 Papaver somniferum HOM05D002230 ORTHO05D002441 4.5e-19 99.4 128 46.9
PSO421G0252 Papaver somniferum HOM05D002230 ORTHO05D002441 9.4e-17 91.7 135 44.4
PSO541G3453 Papaver somniferum HOM05D002230 ORTHO05D002441 2.7e-16 90.1 136 44.9
PSO541G3522 Papaver somniferum HOM05D002230 ORTHO05D002441 6.1e-16 89.0 140 47.1
PSO017G6172 Papaver somniferum HOM05D002230 ORTHO05D002441 7.9e-16 88.6 134 44.0
PSO170G2940 Papaver somniferum HOM05D002230 ORTHO05D002441 1.8e-15 87.4 115 47.8
THA.LOC104815521 Tarenaya hassleriana HOM05D002230 ORTHO05D002441 1.7e-13 80.9 128 37.5
Thhalv10006612m.g Eutrema salsugineum HOM05D002230 ORTHO05D002441 2.2e-13 80.5 127 38.6
PSO017G2413 Papaver somniferum HOM05D002230 ORTHO05D002441 3.7e-13 79.7 98 44.9
PSO782G1699 Papaver somniferum HOM05D002230 ORTHO05D002441 3.7e-13 79.7 113 42.5
BraA09t42020Z Brassica rapa HOM05D002230 ORTHO05D002441 4.8e-13 79.3 106 41.5
PSO170G1574 Papaver somniferum HOM05D002230 ORTHO05D002441 4.8e-13 79.3 113 42.5
unitig_748.g7990 Utricularia gibba HOM05D002230 ORTHO05D002441 8.2e-13 78.6 113 40.7
Aa31LG1G7760 Aethionema arabicum HOM05D002230 ORTHO05D002441 1.1e-12 78.2 122 41.0
BcaC07g42052 Brassica carinata HOM05D002230 ORTHO05D002441 1.4e-12 77.8 107 41.1
AT1G06720 Arabidopsis thaliana HOM05D002230 ORTHO05D002441 1.8e-12 77.4 106 40.6
Glyma.11G125100 Glycine max HOM05D002230 ORTHO05D002441 1.8e-12 77.4 114 41.2
Glyma.12G049700 Glycine max HOM05D002230 ORTHO05D002441 1.8e-12 77.4 114 41.2
Cfa015221 Carpinus fangiana HOM05D002230 ORTHO05D002441 2.4e-12 77.0 113 39.8
Haze_01398 Corylus avellana HOM05D002230 ORTHO05D002441 2.4e-12 77.0 113 39.8
MELO3C013185.2 Cucumis melo HOM05D002230 ORTHO05D002441 2.4e-12 77.0 113 38.9
CsaV3_7G021630 Cucumis sativus L. HOM05D002230 ORTHO05D002441 2.4e-12 77.0 113 38.9
MD00G1071300 Malus domestica HOM05D002230 ORTHO05D002441 2.4e-12 77.0 113 38.9
AL1G16730 Arabidopsis lyrata HOM05D002230 ORTHO05D002441 3.1e-12 76.6 106 39.6
QL03p066506 Quercus lobata HOM05D002230 ORTHO05D002441 3.1e-12 76.6 113 40.7
Sc13g0000880 Simmondsia chinensis HOM05D002230 ORTHO05D002441 3.1e-12 76.6 113 40.7
VMungo1127G0405 Vigna mungo HOM05D002230 ORTHO05D002441 3.1e-12 76.6 113 41.6
C08p51050 Brassica napus HOM05D002230 ORTHO05D002441 4.1e-12 76.3 106 40.6
BolC8t52632H Brassica oleracea HOM05D002230 ORTHO05D002441 4.1e-12 76.3 106 40.6
ClCG09G010650 Citrullus lanatus HOM05D002230 ORTHO05D002441 4.1e-12 76.3 113 38.9
Gohir.A10G197400 Gossypium hirsutum HOM05D002230 ORTHO05D002441 4.1e-12 76.3 113 40.7
Nn3g21087 Nelumbo nucifera HOM05D002230 ORTHO05D002441 4.1e-12 76.3 113 39.8
Sed0010811 Sechium edule HOM05D002230 ORTHO05D002441 4.1e-12 76.3 135 35.6
MD03G1154000 Malus domestica HOM05D002230 ORTHO05D002441 5.3e-12 75.9 113 38.1
CSS0011706 Camellia sinensis var. sinensis HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 39.8
CSS0042856 Camellia sinensis var. sinensis HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 39.8
Carub.0001s0605 Capsella rubella HOM05D002230 ORTHO05D002441 6.9e-12 75.5 106 39.6
Gohir.A03G041200 Gossypium hirsutum HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 40.7
Gohir.D10G204500 Gossypium hirsutum HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 40.7
Gorai.003G133300 Gossypium raimondii HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 40.7
Gorai.011G229500 Gossypium raimondii HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 40.7
Manes.09G003400 Manihot esculenta HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 39.8
Peaxi162Scf00282g00128 Petunia axillaris HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 40.7
Thecc.10G116300 Theobroma cacao HOM05D002230 ORTHO05D002441 6.9e-12 75.5 113 40.7
Aqoxy1G01987 Aquilegia oxysepala HOM05D002230 ORTHO05D002441 9.1e-12 75.1 111 41.4
A09p66820 Brassica napus HOM05D002230 ORTHO05D002441 9.1e-12 75.1 106 39.6
A10p05300 Brassica napus HOM05D002230 ORTHO05D002441 9.1e-12 75.1 105 41.0
C05p04900 Brassica napus HOM05D002230 ORTHO05D002441 9.1e-12 75.1 105 41.0
BolC5t29262H Brassica oleracea HOM05D002230 ORTHO05D002441 9.1e-12 75.1 105 41.0
BraA10t42795Z Brassica rapa HOM05D002230 ORTHO05D002441 9.1e-12 75.1 105 41.0
Lj1g0018031 Lotus japonicus HOM05D002230 ORTHO05D002441 9.1e-12 75.1 113 39.8
Lalb_Chr01g0003061 Lupinus albus HOM05D002230 ORTHO05D002441 9.1e-12 75.1 113 40.7
Sp1g05450 Schrenkiella parvula HOM05D002230 ORTHO05D002441 9.1e-12 75.1 105 41.0
GSVIVG01020936001 Vitis vinifera HOM05D002230 ORTHO05D002441 9.1e-12 75.1 113 38.9
CiPaw.01G173300 Carya illinoinensis HOM05D002230 ORTHO05D002441 1.2e-11 74.7 113 39.8
Cc03_g10880 Coffea canephora HOM05D002230 ORTHO05D002441 1.2e-11 74.7 111 39.6
ECA236G3424 Erigeron canadensis HOM05D002230 ORTHO05D002441 1.2e-11 74.7 117 41.9
Lj3g0013974 Lotus japonicus HOM05D002230 ORTHO05D002441 1.2e-11 74.7 113 39.8
TWI38G2091 Tripterygium wilfordii HOM05D002230 ORTHO05D002441 1.2e-11 74.7 113 39.8
TAR627G1002 Trochodendron aralioides HOM05D002230 ORTHO05D002441 1.2e-11 74.7 113 38.9
Eucgr.A00036 Eucalyptus grandis HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 39.8
Phvul.011G051900 Phaseolus vulgaris HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 40.7
Prupe.1G548200 Prunus persica HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 37.2
Prupe.8G069100 Prunus persica HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 37.2
SHI00660 Sapria himalayana HOM05D002230 ORTHO05D002441 1.5e-11 74.3 107 42.1
Solyc01g097640.3 Solanum lycopersicum HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 39.8
Sopen00g003550 Solanum pennellii HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 39.8
Sopen01g041250 Solanum pennellii HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 39.8
PGSC0003DMG403019442 Solanum tuberosum HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 39.8
TPR.G34218 Trifolium pratense HOM05D002230 ORTHO05D002441 1.5e-11 74.3 113 39.8
CARHR006400 Cardamine hirsuta HOM05D002230 ORTHO05D002441 2.0e-11 73.9 116 39.7
Ca_20807_v3 Cicer arietinum L. HOM05D002230 ORTHO05D002441 2.0e-11 73.9 113 39.8
Duzib114G0665 Durio zibethinus HOM05D002230 ORTHO05D002441 2.0e-11 73.9 113 39.8
Lalb_Chr19g0138431 Lupinus albus HOM05D002230 ORTHO05D002441 2.0e-11 73.9 113 39.8
Medtr4g068150 Medicago truncatula HOM05D002230 ORTHO05D002441 2.0e-11 73.9 113 39.8
Nitab4.5_0005729g0040 Nicotiana tabacum HOM05D002230 ORTHO05D002441 2.0e-11 73.9 113 38.9
Nitab4.5_0009733g0020 Nicotiana tabacum HOM05D002230 ORTHO05D002441 2.0e-11 73.9 113 38.9
RcHm_v2.0_Chr4g0406311 Rosa chinensis HOM05D002230 ORTHO05D002441 2.0e-11 73.9 114 36.8
Hma1.2p1_0007F.1_g004970 Hydrangea macrophylla HOM05D002230 ORTHO05D002441 2.6e-11 73.6 113 38.9
ATR0317G080 Amborella trichopoda HOM05D002230 ORTHO05D002441 3.4e-11 73.2 125 38.4
SGA_v2.0_scaffold172G39053 Striga asiatica HOM05D002230 ORTHO05D002441 3.4e-11 73.2 135 36.3
arahy.Tifrunner.gnm1.ann1.W5M1I0 Arachis hypogaea HOM05D002230 ORTHO05D002441 4.5e-11 72.8 113 39.8
arahy.Tifrunner.gnm1.ann1.XT66D5 Arachis hypogaea HOM05D002230 ORTHO05D002441 4.5e-11 72.8 113 39.8
Dinv44229 Davidia involucrata HOM05D002230 ORTHO05D002441 4.5e-11 72.8 113 38.9
Zm00001eb015920 Zea mays HOM05D002230 ORTHO05D002441 4.5e-11 72.8 112 41.1
HanXRQChr14g0454041 Helianthus annuus HOM05D002230 ORTHO05D002441 5.9e-11 72.4 111 40.5
Lj1A1071T61 Lonicera japonica HOM05D002230 ORTHO05D002441 5.9e-11 72.4 111 39.6
Os03g0333100 Oryza sativa ssp. japonica HOM05D002230 ORTHO05D002441 5.9e-11 72.4 112 41.1
Atru.chr4.1347 Acer truncatum HOM05D002230 ORTHO05D002441 7.7e-11 72.0 113 40.7
Dinv36883 Davidia involucrata HOM05D002230 ORTHO05D002441 7.7e-11 72.0 113 37.2
Potri.017G017700 Populus trichocarpa HOM05D002230 ORTHO05D002441 7.7e-11 72.0 111 39.6
Sed0001302 Sechium edule HOM05D002230 ORTHO05D002441 7.7e-11 72.0 111 36.9
Cpa.g.sc9.331 Carica papaya HOM05D002230 ORTHO05D002441 1.0e-10 71.6 113 39.8
vmacro16180 Vaccinium macrocarpon HOM05D002230 ORTHO05D002441 1.0e-10 71.6 113 37.2
CAN.G134.124 Capsicum annuum HOM05D002230 ORTHO05D002441 1.3e-10 71.2 113 38.1
Psat7g208680 Pisum sativum HOM05D002230 ORTHO05D002441 1.3e-10 71.2 113 38.1
HPP92_015122 Vanilla planifolia HOM05D002230 ORTHO05D002441 1.3e-10 71.2 114 36.8
Ciclev10018567m.g Citrus clementina HOM05D002230 ORTHO05D002441 1.7e-10 70.9 113 40.7
SalBow4G2246 Salvia bowleyana HOM05D002230 ORTHO05D002441 1.7e-10 70.9 113 36.3
FvH4_4g10660 Fragaria vesca HOM05D002230 ORTHO05D002441 2.2e-10 70.5 113 36.3
FAN07G1373 Fragaria x ananassa HOM05D002230 ORTHO05D002441 2.2e-10 70.5 113 36.3
FAN12G3082 Fragaria x ananassa HOM05D002230 ORTHO05D002441 2.2e-10 70.5 113 36.3
FAN12G3273 Fragaria x ananassa HOM05D002230 ORTHO05D002441 2.2e-10 70.5 113 36.3
MBI04_g09487_MAGBIO Magnolia biondii HOM05D002230 ORTHO05D002441 2.2e-10 70.5 112 36.6
Ciclev10027707m.g Citrus clementina HOM05D002230 ORTHO05D002441 2.9e-10 70.1 112 41.1
FAN17G0610 Fragaria x ananassa HOM05D002230 ORTHO05D002441 2.9e-10 70.1 113 36.3
RcHm_v2.0_Chr5g0051051 Rosa chinensis HOM05D002230 ORTHO05D002441 2.9e-10 70.1 114 36.0
SHI22050 Sapria himalayana HOM05D002230 ORTHO05D002441 2.9e-10 70.1 107 41.1
DCAR_027245 Daucus carota HOM05D002230 ORTHO05D002441 3.8e-10 69.7 110 40.0
Hund16448 Selenicereus undatus HOM05D002230 ORTHO05D002441 3.8e-10 69.7 113 38.1
Lsat_1_v5_gn_6_31421 Lactuca sativa HOM05D002230 ORTHO05D002441 5.0e-10 69.3 111 38.7
BcaC05g24645 Brassica carinata HOM05D002230 ORTHO05D002441 8.5e-10 68.6 112 38.4
CANSAT54G2648 Cannabis sativa HOM05D002230 ORTHO05D002441 8.5e-10 68.6 113 36.3
PSO339G1305 Papaver somniferum HOM05D002230 ORTHO05D002441 1.4e-09 67.8 98 40.8
PSO832G2976 Papaver somniferum HOM05D002230 ORTHO05D002441 2.5e-09 67.0 96 45.8
Ciclev10027721m.g Citrus clementina HOM05D002230 ORTHO05D002441 4.2e-09 66.2 114 38.6
Ah.04g150630 Amaranthus hybridus HOM05D002230 ORTHO05D002441 9.4e-09 65.1 115 34.8
Migut.A00192 Erythranthe guttata HOM05D002230 ORTHO05D002441 9.4e-09 65.1 111 36.0
SEGI_31495 Sequoiadendron giganteum HOM05D002230 ORTHO05D002441 9.4e-09 65.1 104 37.5
EL10Ac3g07289 Beta vulgaris HOM05D002230 ORTHO05D002441 1.2e-08 64.7 115 32.2
PSO264G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 1.2e-08 64.7 98 39.8
PSO332G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 1.2e-08 64.7 98 40.8
PSO421G0346 Papaver somniferum HOM05D002230 ORTHO05D002441 1.2e-08 64.7 98 40.8
PSO673G0034 Papaver somniferum HOM05D002230 ORTHO05D002441 1.2e-08 64.7 98 39.8
AUR62021045 Chenopodium quinoa HOM05D002230 ORTHO05D002441 1.6e-08 64.3 113 35.4
CDE06G0512 Ceratophyllum demersum HOM05D002230 ORTHO05D002441 2.7e-08 63.5 114 34.2
ECA233G0320 Erigeron canadensis HOM05D002230 ORTHO05D002441 2.7e-08 63.5 110 39.1
SMO358G0014 Selaginella moellendorffii HOM05D002230 ORTHO05D002441 2.7e-08 63.5 126 31.7
PSO017G1730 Papaver somniferum HOM05D002230 ORTHO05D002441 3.6e-08 63.2 107 41.1
PSO421G0277 Papaver somniferum HOM05D002230 ORTHO05D002441 6.1e-08 62.4 97 39.2
Actinidia32938 Actinidia chinensis HOM05D002230 ORTHO05D002441 7.9e-08 62.0 85 38.8
Pp3c13_14960 Physcomitrium patens HOM05D002230 ORTHO05D002441 1.4e-07 61.2 130 30.8
PSO017G6673 Papaver somniferum HOM05D002230 ORTHO05D002441 1.8e-07 60.8 140 35.0
AUR62018398 Chenopodium quinoa HOM05D002230 ORTHO05D002441 2.3e-07 60.5 113 34.5
Mapoly0040s0120 Marchantia polymorpha HOM05D002230 ORTHO05D002441 3.0e-07 60.1 102 34.3
PSO384G3823 Papaver somniferum HOM05D002230 ORTHO05D002441 3.9e-07 59.7 117 35.0
FAN22G2096 Fragaria x ananassa HOM05D002230 ORTHO05D002441 5.1e-07 59.3 85 35.3
PSO675G3184 Papaver somniferum HOM05D002230 ORTHO05D002441 8.8e-07 58.5 100 37.0
PSO781G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 8.8e-07 58.5 100 37.0
PSO781G0074 Papaver somniferum HOM05D002230 ORTHO05D002441 8.8e-07 58.5 100 37.0
PSO781G0106 Papaver somniferum HOM05D002230 ORTHO05D002441 8.8e-07 58.5 100 37.0
PSO781G0261 Papaver somniferum HOM05D002230 ORTHO05D002441 8.8e-07 58.5 100 37.0
PSO781G0262 Papaver somniferum HOM05D002230 ORTHO05D002441 8.8e-07 58.5 100 37.0
AagrBONN_evm.TU.Sc2ySwM_369.529 Anthoceros agrestis HOM05D002230 ORTHO05D002441 1.5e-06 57.8 96 35.4
PSO170G0074 Papaver somniferum HOM05D002230 ORTHO05D002441 7.4e-06 55.5 70 48.6
PSO782G4102 Papaver somniferum HOM05D002230 ORTHO05D302329 7.4e-06 55.5 101 33.7


User provided reference genes

Program Settings