Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 5.2e-172 607.8 356 100.0
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.1e-110 404.1 351 62.4
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.8e-106 389.0 304 70.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 6.5e-106 388.3 313 69.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.1e-104 383.3 305 70.2
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 8.8e-103 377.9 288 68.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.0e-102 376.7 305 67.2
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.7e-102 375.2 344 60.8
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 9.7e-102 374.4 335 59.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.3e-101 374.0 298 65.4
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 2.8e-101 372.9 288 66.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 2.8e-101 372.9 305 66.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 4.8e-101 372.1 309 68.3
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 8.2e-101 371.3 329 61.1
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.4e-100 370.5 342 59.9
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.8e-100 370.2 352 60.5
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.8e-100 370.2 334 61.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 3.1e-100 369.4 282 66.3
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 5.3e-100 368.6 291 66.3
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 5.3e-100 368.6 351 60.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 9.1e-100 367.9 315 64.8
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 2.6e-99 366.3 306 63.1
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.5e-99 365.9 303 63.7
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.5e-99 365.5 339 60.5
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.0e-98 364.4 296 68.9
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.0e-98 364.4 286 65.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.7e-98 363.6 291 67.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 3.8e-98 362.5 288 68.4
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 8.5e-98 361.3 341 65.1
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.5e-97 359.8 313 62.0
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 3.2e-97 359.4 297 67.7
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 5.5e-97 358.6 275 69.1
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.5e-97 358.6 309 66.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 5.5e-97 358.6 307 66.4
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 1.2e-96 357.5 298 63.4
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.6e-96 357.1 314 65.6
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.6e-96 357.1 289 68.9
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 2.1e-96 356.7 304 64.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 5.2e-95 352.1 297 63.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 8.8e-95 351.3 291 66.0
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.1e-94 350.9 308 65.6
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.1e-94 350.9 298 61.4
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.5e-94 350.5 310 61.6
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.5e-94 350.5 309 64.4
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.2e-93 346.7 283 67.5
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 6.3e-93 345.1 306 63.1
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 8.2e-93 344.7 294 60.5
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.1e-92 344.4 301 60.8
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.4e-92 344.0 308 60.1
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 4.1e-92 342.4 293 64.5
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 9.1e-92 341.3 277 68.6
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.6e-91 340.5 251 67.7
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 3.5e-91 339.3 278 66.9
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 3.5e-91 339.3 310 61.6
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.7e-90 337.0 252 68.3
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.5e-89 334.0 235 71.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.5e-89 334.0 230 73.5
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.6e-88 330.5 279 63.1
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 3.6e-88 329.3 224 75.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 8.0e-88 328.2 309 59.9
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.3e-87 326.6 260 69.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.0e-87 326.2 300 61.0
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 6.8e-87 325.1 298 61.7
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 8.8e-87 324.7 318 60.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.0e-86 323.6 281 62.3
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 2.0e-86 323.6 306 61.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.4e-86 322.8 345 54.8
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 7.5e-86 321.6 242 66.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 9.8e-86 321.2 308 62.0
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.3e-85 320.9 205 76.1
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 3.7e-85 319.3 266 65.4
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 7.0e-84 315.1 302 58.6
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 9.1e-84 314.7 294 57.8
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.2e-83 314.3 297 59.3
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 3.5e-83 312.8 285 62.8
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 4.5e-83 312.4 269 64.3
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.0e-82 311.2 281 59.8
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.7e-82 310.5 337 55.5
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.7e-82 310.5 361 52.6
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.2e-82 310.1 294 60.9
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 3.2e-81 306.2 347 54.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 4.2e-81 305.8 305 56.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 5.5e-81 305.4 226 69.5
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 9.4e-81 304.7 347 54.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 2.3e-79 300.1 285 62.1
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 4.0e-79 299.3 285 61.8
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 4.0e-79 299.3 285 61.8
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 5.2e-79 298.9 297 60.3
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 8.8e-79 298.1 356 52.5
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.2e-78 297.7 302 57.0
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.5e-78 297.4 297 59.9
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.5e-78 297.4 200 72.0
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 2.0e-78 297.0 280 57.9
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.2e-77 293.5 306 56.9
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 4.9e-77 292.4 265 61.1
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 7.0e-76 288.5 245 65.7
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.2e-75 287.7 289 56.7
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.5e-75 285.8 280 57.9
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.5e-75 285.8 281 58.0
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.0e-74 284.6 297 55.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.3e-73 279.6 303 54.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.3e-73 279.6 303 54.5
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.2e-72 277.7 272 59.6
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 6.1e-72 275.4 297 56.6
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 4.4e-70 269.2 233 56.7
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 5.7e-70 268.9 300 55.0
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 4.1e-68 262.7 298 53.0
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 7.8e-67 258.5 173 71.7
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.3e-65 253.1 258 59.3
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.6e-64 249.6 283 49.5
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.4e-63 247.7 264 52.3
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.4e-60 237.7 288 56.2
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.7e-58 230.7 140 80.7
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.4e-54 216.5 237 47.7
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 7.5e-54 215.3 282 44.7
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.2e-53 213.8 312 43.3
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.1e-48 195.3 120 80.0
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 3.1e-47 193.4 265 44.2
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 6.4e-45 185.7 124 67.7
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 4.4e-38 162.9 95 81.1
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 4.9e-37 159.5 240 41.7
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.1e-36 158.3 179 50.3
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 4.2e-36 156.4 245 45.3
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.7e-35 153.7 291 36.1
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.0e-34 151.8 177 42.9
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 7.9e-27 125.6 70 84.3
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 8.4e-21 105.5 176 44.9
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.9e-20 104.4 121 50.4
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 5.5e-20 102.8 196 30.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-19 100.9 262 27.5
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.0e-18 98.6 117 45.3
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.1e-12 75.9 228 27.2
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.3e-10 70.9 192 28.1
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 3.0e-10 70.5 216 27.3
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 4.3e-09 66.6 102 29.4
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 7.4e-09 65.9 48 68.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 6.3e-08 62.8 50 62.0


User provided reference genes

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