Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 2368.2 1111 100.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1862.4 1112 75.4
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1833.5 1114 75.0
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1808.9 1112 73.7
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1803.1 1116 73.6
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1796.2 1112 72.3
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1793.5 1112 72.1
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1786.2 1116 73.4
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1785.8 1116 72.2
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1782.7 1116 72.5
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1780.0 1096 73.6
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1778.1 1116 72.0
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1773.4 1116 71.6
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1773.1 1116 71.6
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1772.3 1114 72.0
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1770.7 1127 72.1
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1770.0 1116 71.5
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1765.0 1112 71.5
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1759.6 1122 70.7
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1117 72.2
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1749.6 1115 71.1
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1747.6 1112 70.7
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1745.7 1074 73.6
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1743.8 1115 70.8
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1742.6 1112 70.1
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1738.4 1115 70.3
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1733.0 1115 70.3
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1730.3 1110 69.8
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1728.0 1113 69.8
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1727.6 1114 70.0
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1724.1 1105 70.2
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1723.8 1102 70.3
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1723.8 1115 69.9
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1719.9 1104 70.2
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1719.9 1067 73.4
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1716.8 1103 70.5
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1716.4 1111 69.9
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1714.1 1112 69.5
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1712.6 1112 69.8
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1711.0 1113 69.4
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1711.0 1107 70.2
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1708.3 1113 69.0
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1708.0 1114 69.4
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1707.2 1113 69.3
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1705.3 1110 68.8
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1704.9 1113 69.2
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1704.1 1111 68.9
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1699.9 1108 69.1
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1112 69.4
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1696.8 1113 69.5
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1696.4 1111 68.8
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1696.4 1112 69.8
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1696.0 1110 68.7
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1694.9 1110 68.5
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1693.7 1229 64.4
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1693.3 1098 69.3
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1691.8 1114 68.8
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1691.4 1111 68.4
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1690.6 1125 68.5
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1684.1 1120 68.5
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1679.5 1111 68.1
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1679.1 1120 68.8
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1677.1 1092 69.6
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1677.1 1110 68.5
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1676.8 1109 68.2
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1669.8 1109 68.0
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1669.1 1113 67.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1664.0 1056 71.4
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1659.0 1094 67.7
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1109 67.2
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1647.9 1126 66.3
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1645.2 1111 68.5
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1642.5 1087 68.8
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1642.1 1099 67.7
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1639.8 1121 66.9
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1636.7 1094 67.8
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1624.0 1111 66.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1622.1 1070 68.4
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1621.3 992 74.1
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1604.7 1104 65.7
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1126 66.1
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1591.6 1143 64.8
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1580.8 1089 66.9
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1560.0 1073 65.5
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1537.7 1163 62.9
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1521.5 997 69.9
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1449.9 929 71.5
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1443.7 898 72.8
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1375.5 834 74.9
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1366.3 1125 55.8
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1357.0 1129 57.0
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1298.5 1033 59.1
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1280.4 1107 55.5
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1277.3 832 69.8
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1265.0 743 76.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1238.8 750 74.5
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1207.2 1122 51.6
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1190.3 762 71.7
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1120.9 667 75.1
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 0.0e+00 1108.6 1130 49.4
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 4.9e-293 1011.5 692 66.8
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 4.6e-259 898.7 684 61.8
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.6e-243 847.0 498 77.3
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 3.0e-218 763.1 512 67.2
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 7.5e-217 758.4 512 67.2
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.1e-212 744.6 569 59.8
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 7.1e-175 619.0 1496 30.5
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.9e-148 531.2 617 45.4
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.3e-148 530.4 381 63.0
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 9.0e-138 495.7 284 78.5
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.4e-114 417.9 240 78.8
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 5.9e-113 413.3 581 39.8
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 7.2e-111 406.4 270 68.9
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 4.4e-100 370.5 828 31.6
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 3.0e-85 321.2 198 72.7
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 1.2e-84 319.3 174 82.2
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.7e-83 315.5 261 55.6
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 1.8e-82 312.0 201 68.7
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 9.2e-82 309.7 217 66.4
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.3e-67 262.7 156 71.2
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 3.0e-64 251.5 208 56.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 7.6e-60 236.9 164 68.9
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 9.2e-58 229.9 129 73.6
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 2.2e-43 182.2 123 65.0
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 6.4e-43 180.6 124 66.9
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 3.9e-40 171.4 198 45.5
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.3e-38 166.4 139 53.2
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.1e-37 161.8 175 47.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.9e-35 155.2 182 45.6
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 4.9e-35 154.5 144 52.1
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-34 153.3 142 52.8
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 6.2e-30 137.5 85 70.6
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 6.2e-30 137.5 82 74.4
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 8.1e-30 137.1 105 54.3
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 5.3e-29 134.4 79 68.4
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 1.4e-26 126.3 139 49.6
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 3.0e-24 118.6 132 47.7
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 1.1e-23 116.7 67 73.1
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 3.3e-23 115.2 103 52.4
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.8e-21 109.4 116 51.7
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 2.0e-20 105.9 53 84.9
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 1.1e-18 100.1 84 56.0
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.5e-18 99.0 86 57.0
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.5e-18 99.0 100 49.0
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 1.2e-17 96.7 61 72.1
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 1.6e-17 96.3 45 86.7
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.0e-16 93.6 45 86.7
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 3.0e-16 92.0 48 79.2
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 8.7e-16 90.5 45 82.2
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 7.4e-15 87.4 135 41.5
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 5.9e-12 77.8 56 57.1
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 7.7e-12 77.4 61 55.7
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 1.7e-06 59.7 90 36.7
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 6.3e-06 57.8 31 74.2


User provided reference genes

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