Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-75 286.2 154 100.0
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 5.7e-67 257.7 154 92.2
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.5e-64 248.4 154 89.6
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 3.8e-63 245.0 154 86.4
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 8.3e-50 200.7 153 77.1
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 7.0e-49 197.6 150 75.3
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 2.0e-48 196.1 125 80.8
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 2.7e-48 195.7 150 74.7
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 2.7e-48 195.7 153 70.6
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 6.0e-48 194.5 150 74.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 3.0e-47 192.2 144 75.0
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 6.6e-47 191.0 153 73.2
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 6.6e-47 191.0 150 72.0
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 8.6e-47 190.7 128 78.9
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 8.6e-47 190.7 125 80.8
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 8.6e-47 190.7 125 80.8
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 8.6e-47 190.7 147 75.5
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.5e-46 189.1 147 74.8
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 3.3e-46 188.7 157 73.9
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 4.3e-46 188.3 125 80.0
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 7.3e-46 187.6 147 74.1
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 7.3e-46 187.6 125 77.6
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.2e-45 186.8 153 68.0
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.6e-45 186.4 153 72.5
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.6e-45 186.4 153 72.5
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.6e-45 186.4 151 74.2
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.6e-45 186.4 150 72.7
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.6e-45 186.4 150 72.7
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.1e-45 186.0 124 78.2
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 2.8e-45 185.7 125 73.6
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.8e-45 185.7 125 77.6
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.8e-45 185.7 120 80.0
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 2.8e-45 185.7 123 78.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 3.6e-45 185.3 118 81.4
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 3.6e-45 185.3 120 80.0
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 3.6e-45 185.3 152 72.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.7e-45 184.9 123 75.6
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 4.7e-45 184.9 133 74.4
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 4.7e-45 184.9 145 75.2
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 4.7e-45 184.9 156 69.9
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 4.7e-45 184.9 124 75.8
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 6.2e-45 184.5 153 71.2
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 6.2e-45 184.5 147 72.8
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 8.1e-45 184.1 148 73.6
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.1e-44 183.7 123 77.2
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-44 183.3 120 80.0
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.4e-44 183.3 122 78.7
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.3e-44 182.6 150 72.0
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.3e-44 182.6 154 68.8
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.1e-44 182.2 124 72.6
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.1e-44 182.2 120 80.0
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.1e-44 182.2 119 79.8
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 3.1e-44 182.2 125 76.0
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.0e-44 181.8 120 79.2
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 4.0e-44 181.8 150 72.0
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 5.2e-44 181.4 124 73.4
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 5.2e-44 181.4 124 73.4
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 5.2e-44 181.4 124 73.4
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 5.2e-44 181.4 124 73.4
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 5.2e-44 181.4 124 73.4
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 6.8e-44 181.0 154 66.9
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 6.8e-44 181.0 120 78.3
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.2e-43 180.3 154 68.8
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 1.5e-43 179.9 150 70.7
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 2.0e-43 179.5 126 72.2
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 2.0e-43 179.5 120 78.3
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.6e-43 179.1 124 72.6
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.6e-43 179.1 150 72.0
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.6e-43 179.1 122 77.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.6e-43 179.1 122 77.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 3.4e-43 178.7 122 77.9
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 3.4e-43 178.7 151 70.9
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 3.4e-43 178.7 122 77.0
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 9.8e-43 177.2 153 67.3
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.7e-42 176.4 120 76.7
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.7e-42 176.4 120 76.7
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.2e-42 176.0 124 71.0
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 2.9e-42 175.6 120 74.2
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 4.9e-42 174.9 148 70.9
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 6.4e-42 174.5 123 75.6
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 6.4e-42 174.5 154 68.2
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 8.3e-42 174.1 156 60.9
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.1e-41 173.7 133 68.4
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.4e-41 173.3 144 70.8
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 1.9e-41 172.9 123 69.9
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.4e-41 172.6 122 77.0
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 4.1e-41 171.8 150 68.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 5.4e-41 171.4 122 73.0
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 9.2e-41 170.6 150 66.0
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.2e-40 170.2 123 70.7
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-40 170.2 150 68.0
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.7e-40 169.1 123 69.9
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.7e-40 169.1 120 72.5
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.7e-40 169.1 120 72.5
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 2.7e-40 169.1 124 71.8
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 3.5e-40 168.7 122 71.3
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.5e-40 168.7 128 67.2
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.0e-40 167.9 120 71.7
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.7e-39 166.4 123 69.9
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.7e-39 166.4 120 71.7
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.3e-39 166.0 122 75.4
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 3.9e-39 165.2 123 69.1
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 3.9e-39 165.2 144 63.2
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.9e-39 165.2 119 71.4
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 6.6e-39 164.5 123 69.1
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 4.3e-38 161.8 156 62.8
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 5.6e-38 161.4 122 73.0
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 5.6e-38 161.4 144 64.6
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 7.3e-38 161.0 147 65.3
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.6e-37 159.8 116 72.4
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 2.6e-35 152.5 193 50.3
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 5.8e-35 151.4 122 63.1
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 5.8e-35 151.4 103 76.7
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 5.8e-35 151.4 125 65.6
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 9.9e-35 150.6 150 64.7
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 9.9e-35 150.6 145 62.1
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.9e-33 146.4 96 79.2
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 3.2e-33 145.6 122 62.3
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.1e-33 145.2 143 56.6
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 5.4e-33 144.8 98 77.6
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 9.2e-33 144.1 99 74.7
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-32 143.3 97 76.3
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.3e-31 140.2 147 51.0
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 6.6e-31 137.9 120 58.3
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 8.6e-31 137.5 100 71.0
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 9.6e-30 134.0 89 78.7
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.1e-29 132.9 119 53.8
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 2.8e-29 132.5 127 52.8
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 3.4e-27 125.6 96 67.7
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 4.9e-26 121.7 120 50.8
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 5.3e-20 101.7 78 66.7
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 6.9e-20 101.3 93 57.0
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 6.9e-20 101.3 93 57.0
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.6e-19 99.4 102 54.9
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.9e-16 87.8 94 55.3
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.7e-15 86.7 63 68.3
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 3.6e-13 79.0 78 55.1
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 2.4e-09 66.2 70 58.6
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 3.2e-09 65.9 70 58.6
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 3.2e-09 65.9 70 58.6
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 3.9e-07 58.9 45 62.2


User provided reference genes

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