Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 5.3e-179 630.9 330 100.0
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 1.6e-167 592.8 330 93.9
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 6.0e-98 361.7 391 52.2
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 1.1e-83 314.3 396 47.0
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 1.6e-82 310.5 380 48.2
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 2.1e-82 310.1 383 48.0
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 2.1e-82 310.1 380 48.2
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 2.7e-82 309.7 401 45.1
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 6.1e-82 308.5 396 47.0
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 1.8e-81 307.0 391 44.5
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 3.0e-81 306.2 391 44.5
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 1.7e-79 300.4 404 44.1
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 2.8e-79 299.7 398 44.0
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 1.4e-78 297.4 403 43.9
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 3.4e-77 292.7 394 45.7
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 7.7e-77 291.6 345 47.5
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 2.9e-76 289.7 383 44.6
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 3.8e-76 289.3 388 44.8
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 6.5e-76 288.5 400 45.0
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 1.4e-75 287.3 346 47.1
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 1.4e-75 287.3 399 44.1
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 2.5e-75 286.6 339 48.4
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 2.5e-75 286.6 339 48.4
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 3.2e-75 286.2 399 44.4
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 7.2e-75 285.0 399 43.9
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 2.1e-74 283.5 399 43.9
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.6e-74 282.7 366 44.8
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 3.6e-74 282.7 339 44.8
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 4.7e-74 282.3 336 46.4
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 1.4e-73 280.8 409 43.3
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 1.4e-73 280.8 339 44.8
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 3.0e-73 279.6 394 43.7
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 3.9e-73 279.3 339 44.2
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 3.9e-73 279.3 362 45.6
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 5.1e-73 278.9 363 43.8
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 6.7e-73 278.5 358 45.5
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 8.8e-73 278.1 358 44.7
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 1.5e-72 277.3 369 45.3
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 2.6e-72 276.6 388 43.8
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 5.7e-72 275.4 395 42.3
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 2.2e-71 273.5 384 43.5
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 2.8e-71 273.1 388 43.8
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 2.8e-71 273.1 384 41.9
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 4.8e-71 272.3 359 42.3
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 6.3e-71 271.9 382 42.1
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 8.2e-71 271.6 339 45.1
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 1.1e-70 271.2 396 42.4
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 1.4e-70 270.8 341 47.5
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.4e-70 270.8 368 43.5
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 3.1e-70 269.6 358 44.7
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 5.3e-70 268.9 387 43.7
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 9.1e-70 268.1 429 39.9
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 1.2e-69 267.7 367 42.8
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 4.5e-69 265.8 371 41.2
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 7.7e-69 265.0 368 43.5
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 1.7e-68 263.8 381 43.3
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 1.7e-68 263.8 367 43.3
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 1.7e-68 263.8 379 43.3
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 3.8e-68 262.7 392 42.9
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 5.0e-68 262.3 371 40.2
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 8.5e-68 261.5 404 41.6
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 1.1e-67 261.2 389 40.6
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 1.9e-67 260.4 385 41.0
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 2.5e-67 260.0 368 43.5
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 7.2e-67 258.5 340 43.5
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 9.4e-67 258.1 297 48.1
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 8.0e-66 255.0 397 41.6
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 8.0e-66 255.0 338 43.5
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 1.8e-65 253.8 393 40.7
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 3.9e-65 252.7 401 41.1
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 3.3e-64 249.6 372 41.7
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 3.3e-64 249.6 354 43.8
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 7.4e-64 248.4 334 44.6
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 9.7e-64 248.1 395 40.5
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 1.3e-63 247.7 381 43.3
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 1.7e-63 247.3 313 47.0
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 3.7e-63 246.1 355 43.1
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 8.2e-63 245.0 336 43.8
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 8.2e-63 245.0 334 44.0
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 1.4e-62 244.2 338 42.9
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 1.8e-62 243.8 372 41.7
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 2.4e-62 243.4 348 42.5
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 3.1e-62 243.0 372 40.6
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 3.1e-62 243.0 347 44.4
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 9.1e-62 241.5 370 39.7
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.6e-61 240.0 392 39.5
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 1.3e-60 237.7 392 39.0
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 6.5e-60 235.3 383 39.4
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 1.9e-59 233.8 371 41.0
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 2.5e-59 233.4 390 37.4
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 5.5e-59 232.3 342 41.5
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 8.0e-58 228.4 307 43.0
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 1.4e-57 227.6 336 42.6
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 1.2e-56 224.6 324 41.0
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 6.3e-55 218.8 375 38.9
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 4.1e-54 216.1 326 39.9
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 5.4e-54 215.7 309 40.8
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 1.2e-53 214.5 338 41.4
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 7.5e-48 195.3 262 39.7
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 3.7e-47 193.0 362 35.6
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 8.3e-47 191.8 320 36.6
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 2.4e-46 190.3 162 56.8
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 1.4e-41 174.5 313 38.0
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 8.9e-41 171.8 194 45.9
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 8.9e-41 171.8 199 44.7
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 5.0e-36 156.0 274 38.7
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 5.0e-36 156.0 433 31.9
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 6.6e-36 155.6 215 41.9
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 4.7e-34 149.4 367 31.9
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 1.1e-27 128.3 410 26.1
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 6.4e-23 112.5 223 37.2
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 5.4e-22 109.4 185 36.8
Cpa.g.sc720.1 Carica papaya HOM05D005759 ORTHO05D007172 7.1e-22 109.0 332 29.5
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 2.5e-19 100.5 73 60.3
GSVIVG01034723001 Vitis vinifera HOM05D005759 ORTHO05D007172 8.1e-18 95.5 100 49.0
PSO339G2548 Papaver somniferum HOM05D005759 ORTHO05D007172 5.8e-16 89.4 102 43.1
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 2.2e-15 87.4 233 32.2
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 1.6e-13 81.3 91 47.3
Lsat_1_v5_gn_7_84341 Lactuca sativa HOM05D005759 ORTHO05D007172 1.1e-11 75.1 152 33.6
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 3.3e-11 73.6 79 48.1
Atru.chr6.1559 Acer truncatum HOM05D000032 ORTHO05D007444 2.0e-08 64.3 197 27.4
FAN01G1973 Fragaria x ananassa HOM05D005759 ORTHO05D007172 3.4e-08 63.5 262 26.7
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 1.3e-07 61.6 153 30.1
CSS0040532 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 4.9e-07 59.7 107 39.3
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 1.4e-06 58.2 144 28.5
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 2.4e-06 57.4 145 28.3
ECA246G2233 Erigeron canadensis HOM05D000032 ORTHO05D007444 3.2e-06 57.0 174 27.0
AUR62007381 Chenopodium quinoa HOM05D000032 ORTHO05D007444 4.2e-06 56.6 170 25.9
Ca_11766_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 4.2e-06 56.6 52 51.9
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 4.2e-06 56.6 122 28.7
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 5.4e-06 56.2 118 27.1
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 5.4e-06 56.2 145 30.3
Ciclev10000690m.g Citrus clementina HOM05D000032 ORTHO05D007444 9.3e-06 55.5 159 26.4
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 9.3e-06 55.5 146 27.4
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 9.3e-06 55.5 143 26.6
PGSC0003DMG400009295 Solanum tuberosum HOM05D000032 ORTHO05D007444 9.3e-06 55.5 218 26.1
THA.LOC104798505 Tarenaya hassleriana HOM05D000032 ORTHO05D007444 9.3e-06 55.5 232 25.9
Thecc.04G268600 Theobroma cacao HOM05D000032 ORTHO05D008248 9.3e-06 55.5 129 31.8


User provided reference genes

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