Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 3.8e-132 474.9 255 100.0
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 6.7e-129 464.2 255 98.4
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 4.0e-89 332.0 252 71.8
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 4.1e-86 322.0 252 70.2
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 8.0e-82 307.8 254 68.1
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.7e-79 300.1 252 68.7
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 1.2e-77 293.9 251 66.9
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 7.7e-77 291.2 249 66.3
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 3.8e-76 288.9 241 66.0
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 8.6e-76 287.7 235 68.9
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 3.3e-75 285.8 241 67.2
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.5e-75 285.0 241 67.6
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 7.2e-75 284.6 250 64.8
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 7.2e-75 284.6 243 65.4
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 7.2e-75 284.6 256 65.6
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 9.5e-75 284.3 241 67.6
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 9.5e-75 284.3 252 65.5
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.6e-74 283.5 247 66.0
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 4.7e-74 282.0 240 65.4
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.7e-74 282.0 241 66.8
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 6.1e-74 281.6 250 64.0
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.4e-73 280.4 238 67.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 4.0e-73 278.9 243 63.4
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 4.0e-73 278.9 257 65.0
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 5.2e-73 278.5 245 64.1
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 1.2e-72 277.3 234 66.2
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.2e-72 277.3 247 64.4
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 2.0e-72 276.6 252 61.5
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 2.6e-72 276.2 244 63.5
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 2.6e-72 276.2 244 63.5
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 3.4e-72 275.8 240 65.0
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 5.7e-72 275.0 250 64.0
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 9.8e-72 274.2 242 64.9
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 9.8e-72 274.2 257 63.8
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 9.8e-72 274.2 253 63.2
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 2.8e-71 272.7 240 66.2
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.7e-71 272.3 252 61.5
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 3.7e-71 272.3 232 66.4
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 4.9e-71 271.9 249 61.4
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 4.9e-71 271.9 256 60.2
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 8.3e-71 271.2 244 64.8
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.8e-70 270.0 248 63.3
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.4e-70 269.6 257 63.0
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 2.4e-70 269.6 231 64.1
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 3.2e-70 269.2 252 61.5
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 5.4e-70 268.5 252 61.9
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 7.0e-70 268.1 234 62.4
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 9.2e-70 267.7 233 63.1
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 2.7e-69 266.2 242 63.2
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.7e-69 266.2 255 59.6
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.5e-69 265.8 255 59.6
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 5.9e-69 265.0 238 64.3
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 7.8e-69 264.6 251 60.6
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.3e-68 263.8 242 62.0
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 1.3e-68 263.8 255 58.4
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.3e-68 263.8 254 60.2
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 2.3e-68 263.1 252 59.5
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 2.3e-68 263.1 252 61.5
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 2.9e-68 262.7 252 59.5
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 3.9e-68 262.3 233 63.9
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.9e-67 260.0 257 58.8
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 3.3e-67 259.2 249 59.8
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 3.3e-67 259.2 253 61.3
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 8.0e-66 254.6 225 63.1
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 8.0e-66 254.6 255 56.9
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.8e-65 253.4 253 60.5
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.8e-65 253.4 243 59.7
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.3e-65 253.1 244 59.0
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 3.1e-65 252.7 244 59.4
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 4.0e-65 252.3 252 58.3
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 4.0e-65 252.3 237 60.8
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 6.8e-65 251.5 252 56.7
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 3.4e-64 249.2 252 59.9
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 7.5e-64 248.1 249 60.2
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 2.9e-63 246.1 233 59.7
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 2.9e-63 246.1 238 58.8
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 3.7e-63 245.7 237 58.2
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 6.4e-63 245.0 234 60.3
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.4e-62 243.8 243 57.2
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.9e-62 243.4 232 60.3
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 3.2e-62 242.7 250 57.2
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 5.4e-62 241.9 246 56.5
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 7.0e-62 241.5 232 58.2
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 7.0e-62 241.5 238 58.4
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 7.0e-62 241.5 238 58.4
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 3.5e-61 239.2 245 58.0
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 2.3e-60 236.5 243 56.0
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 3.0e-60 236.1 251 56.6
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 3.9e-60 235.7 245 55.9
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 8.6e-60 234.6 257 55.3
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 2.5e-59 233.0 249 56.2
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 3.3e-59 232.6 245 54.7
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 3.3e-59 232.6 246 54.9
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 3.3e-59 232.6 237 58.6
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 9.5e-59 231.1 250 54.0
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.6e-58 230.3 246 54.5
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.8e-58 229.6 175 69.7
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 2.8e-58 229.6 240 55.8
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 4.7e-58 228.8 240 54.6
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 4.7e-58 228.8 240 54.6
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.4e-57 227.3 255 53.7
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 9.8e-56 221.1 239 53.6
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 2.7e-53 213.0 249 51.4
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 7.3e-51 204.9 242 50.0
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.5e-48 197.2 258 48.1
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.5e-48 197.2 198 61.1
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 9.9e-48 194.5 244 47.1
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 4.9e-47 192.2 196 58.7
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 8.3e-47 191.4 243 48.1
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 3.2e-46 189.5 243 47.7
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 3.2e-46 189.5 243 47.7
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 2.1e-45 186.8 117 80.3
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 1.3e-44 184.1 245 45.3
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.2e-42 177.6 173 59.5
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.1e-33 147.9 116 61.2
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 9.9e-32 141.4 154 57.1
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 4.6e-29 132.5 117 60.7
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 7.9e-29 131.7 242 41.3
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.3e-26 124.4 180 43.3
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 2.8e-26 123.2 228 37.3
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 8.4e-23 111.7 75 72.0
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 2.7e-21 106.7 79 73.4
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 6.0e-21 105.5 135 50.4
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 7.9e-21 105.1 153 46.4
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 4.8e-18 95.9 87 56.3
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 7.6e-16 88.6 90 58.9
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 3.2e-14 83.2 101 52.5
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 2.5e-11 73.6 61 62.3
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 3.3e-11 73.2 118 44.1
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 1.0e-07 61.6 55 65.5
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 8.4e-07 58.5 72 50.0


User provided reference genes

Program Settings