Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 3.2e-303 1044.3 517 100.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.0e-285 984.6 510 94.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.4e-247 859.4 523 83.4
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.0e-240 834.3 517 81.0
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-228 796.6 516 78.1
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.0e-228 795.8 509 78.4
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.4e-228 794.7 535 76.3
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.7e-228 793.5 515 78.1
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 8.2e-227 790.4 514 77.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.1e-226 788.5 515 77.7
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 7.0e-226 787.3 512 77.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.5e-225 785.0 509 77.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 5.9e-225 784.3 516 76.4
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.0e-224 783.5 521 76.8
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.3e-224 783.1 503 78.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.8e-224 781.6 521 76.2
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.0e-224 781.2 501 79.2
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 5.0e-224 781.2 513 78.2
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.1e-223 780.0 521 76.8
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.5e-223 779.6 513 77.8
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.9e-223 779.2 522 76.4
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.5e-223 778.9 524 76.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 4.2e-223 778.1 512 77.5
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 7.2e-223 777.3 520 75.8
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 7.2e-223 777.3 516 76.6
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-222 776.2 513 77.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.1e-222 775.8 508 77.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.7e-222 775.4 503 78.3
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.7e-222 775.4 521 76.4
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 6.1e-222 774.2 516 76.6
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.0e-222 773.9 503 78.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 8.0e-222 773.9 498 78.1
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-221 773.1 503 78.1
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.5e-220 769.6 519 75.5
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.5e-220 769.6 520 75.4
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.6e-220 768.8 523 75.5
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.5e-220 767.3 514 74.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 9.8e-220 766.9 552 72.5
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 9.8e-220 766.9 508 76.4
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.3e-219 766.5 517 74.3
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.3e-219 766.5 507 76.1
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.7e-219 766.1 514 76.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 3.7e-219 765.0 499 77.8
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 8.3e-219 763.8 523 76.3
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.4e-218 762.3 506 77.3
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 4.1e-218 761.5 497 77.9
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 5.4e-218 761.1 516 74.4
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.6e-217 759.6 516 74.2
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.5e-217 758.4 519 75.7
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 2.2e-216 755.7 497 76.1
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.1e-215 753.4 512 75.0
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 7.2e-215 750.7 509 74.7
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 7.2e-215 750.7 514 74.7
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 9.5e-215 750.4 511 73.6
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.6e-214 749.6 520 73.8
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 3.6e-214 748.4 506 75.1
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.0e-213 746.9 514 73.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 6.8e-213 744.2 508 74.2
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 8.8e-213 743.8 508 74.4
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.0e-212 742.7 497 75.3
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.4e-212 741.9 585 67.4
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 4.4e-212 741.5 512 74.4
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 5.7e-212 741.1 522 72.6
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 5.4e-210 734.6 536 70.3
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.3e-208 729.2 506 75.1
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.9e-208 728.8 481 75.7
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 8.6e-208 727.2 531 71.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.1e-207 726.9 522 70.9
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.5e-207 726.5 463 80.1
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 9.5e-207 723.8 508 73.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-206 723.0 513 73.5
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.6e-206 723.0 522 70.5
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.7e-206 721.5 509 71.3
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.2e-204 716.8 560 68.2
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 3.4e-204 715.3 463 78.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 7.5e-204 714.1 523 69.4
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 4.9e-203 711.4 537 70.2
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 3.2e-202 708.8 521 69.7
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.6e-201 706.4 512 70.5
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 6.6e-200 701.0 505 71.3
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.5e-199 699.9 520 69.8
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.5e-199 699.9 513 70.2
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.5e-199 699.9 513 70.2
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.6e-199 698.0 535 67.7
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 8.9e-197 690.6 528 68.6
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.3e-192 676.0 502 69.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 4.3e-191 671.8 480 72.5
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 7.3e-191 671.0 480 72.5
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.2e-190 670.2 507 68.6
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.4e-188 662.1 439 77.2
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 9.9e-188 660.6 525 68.0
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.7e-187 659.8 507 67.3
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.6e-185 653.3 532 64.8
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.7e-184 649.8 512 68.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 8.1e-182 641.0 471 70.7
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.1e-181 640.6 526 63.7
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 4.6e-177 625.2 485 65.8
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.8e-177 624.4 477 65.4
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.5e-175 619.4 421 75.8
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.6e-174 615.5 535 62.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 3.6e-174 615.5 549 58.7
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.0e-173 612.1 485 63.7
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.4e-172 609.0 503 64.2
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.8e-165 586.6 445 67.9
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.2e-162 575.5 472 63.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 6.0e-161 571.6 372 80.1
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 6.7e-160 568.2 536 56.7
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 3.3e-159 565.8 372 78.2
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.8e-158 562.0 510 58.4
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.4e-157 560.5 478 60.5
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 5.3e-157 558.5 372 77.2
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.0e-157 557.8 394 73.1
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.7e-155 553.5 334 80.5
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.9e-154 550.1 389 72.0
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.2e-154 549.3 446 65.2
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 8.7e-152 541.2 503 56.3
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.6e-145 520.4 487 55.9
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 9.0e-141 504.6 505 54.1
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.9e-138 496.9 287 82.9
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 5.5e-138 495.4 361 70.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.5e-130 469.9 407 63.1
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 7.4e-127 458.4 367 67.3
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.3e-120 436.8 345 69.6
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 6.5e-115 418.7 439 50.6
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-109 401.0 481 50.3
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 4.8e-102 375.9 375 58.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.5e-100 369.4 330 61.8
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.9e-88 328.6 297 62.0
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.7e-86 324.3 238 70.6
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.8e-84 315.5 321 56.7
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.5e-79 298.9 162 88.3
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.8e-79 298.5 217 68.2
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 6.4e-78 295.8 247 62.8
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.1e-69 268.5 145 89.0
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 4.1e-69 266.5 396 39.6
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 7.3e-66 255.8 135 87.4
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 5.2e-64 249.6 311 43.4
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.8e-64 249.2 145 82.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 4.7e-57 226.5 226 58.8
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.7e-54 218.0 330 41.2
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 6.4e-46 189.5 163 60.7
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.4e-40 171.0 100 79.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 8.4e-38 162.5 202 51.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-37 161.8 104 72.1
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 6.0e-28 129.8 334 29.0
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-27 128.6 68 85.3
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.7e-25 120.6 206 43.7
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.0e-18 98.2 448 26.3
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 9.7e-18 95.9 65 72.3
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 2.5e-13 81.3 86 54.7
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 5.5e-13 80.1 60 63.3
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.4e-11 75.5 38 89.5
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.7e-11 73.2 90 54.4
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 2.2e-09 68.2 33 90.9
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 7.0e-08 63.2 42 61.9
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.1e-08 62.8 46 56.5
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.3e-06 58.9 51 60.8


User provided reference genes

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