Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 2.0e-144 515.8 258 100.0
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 4.1e-142 508.1 258 97.7
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 4.6e-93 345.1 263 66.9
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 4.7e-90 335.1 261 66.3
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 1.2e-88 330.5 259 65.3
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 2.6e-88 329.3 252 65.9
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 1.3e-87 327.0 263 63.1
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 6.4e-87 324.7 261 65.1
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 8.4e-87 324.3 260 62.3
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.1e-86 323.9 256 64.5
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 4.1e-86 322.0 259 63.3
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 1.2e-85 320.5 263 63.1
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 1.2e-85 320.5 259 62.9
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 2.1e-85 319.7 263 61.2
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 2.7e-85 319.3 258 62.0
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 3.5e-85 318.9 263 61.6
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 6.0e-85 318.2 256 64.1
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 6.0e-85 318.2 256 64.1
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 6.0e-85 318.2 260 61.2
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.8e-85 317.8 256 64.1
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 1.0e-84 317.4 263 62.4
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.0e-84 317.4 256 64.1
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 1.0e-84 317.4 259 61.4
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.7e-84 316.6 255 62.0
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.7e-84 316.6 256 64.1
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 5.1e-84 315.1 261 61.7
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 1.5e-83 313.5 259 61.8
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 1.9e-83 313.2 261 61.3
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.3e-83 312.4 256 63.3
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.3e-83 312.4 256 63.3
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 5.6e-83 311.6 259 59.5
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 5.6e-83 311.6 259 59.5
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 7.3e-83 311.2 261 61.7
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 1.6e-82 310.1 253 58.9
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 3.6e-82 308.9 261 60.5
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 8.1e-82 307.8 263 60.1
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 8.1e-82 307.8 262 60.3
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 1.4e-81 307.0 269 59.9
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 2.4e-81 306.2 262 59.9
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 2.4e-81 306.2 263 60.8
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 2.4e-81 306.2 261 59.4
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 3.1e-81 305.8 222 68.9
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 6.8e-81 304.7 265 59.2
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 8.9e-81 304.3 261 57.9
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 1.5e-80 303.5 263 60.5
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 2.6e-80 302.8 253 58.9
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 2.6e-80 302.8 253 59.3
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 4.4e-80 302.0 253 58.9
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 1.7e-79 300.1 263 58.6
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 3.8e-79 298.9 267 59.9
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 3.8e-79 298.9 266 58.3
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 6.4e-79 298.1 254 59.8
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 1.4e-78 297.0 264 59.1
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 4.2e-78 295.4 272 56.6
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 3.5e-77 292.4 263 57.0
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 3.9e-76 288.9 265 56.6
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 6.6e-76 288.1 259 56.8
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 1.1e-75 287.3 257 55.6
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 1.9e-75 286.6 267 56.9
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 1.9e-75 286.6 264 55.7
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 3.3e-75 285.8 264 56.4
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 3.3e-75 285.8 231 62.8
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 7.3e-75 284.6 260 56.9
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 7.3e-75 284.6 260 56.9
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 7.3e-75 284.6 260 56.9
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 4.8e-74 282.0 264 54.2
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 6.2e-74 281.6 264 55.3
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 8.1e-74 281.2 253 56.9
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 2.4e-73 279.6 260 56.9
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 3.1e-73 279.3 263 53.2
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 5.3e-73 278.5 265 54.3
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 2.0e-72 276.6 263 52.5
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 2.0e-72 276.6 263 53.6
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 5.8e-72 275.0 259 53.7
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 9.9e-72 274.2 241 57.3
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 1.7e-71 273.5 259 55.6
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 1.7e-71 273.5 251 55.0
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.7e-71 273.5 258 53.1
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 1.9e-70 270.0 314 50.0
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 2.4e-70 269.6 260 54.2
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 2.7e-69 266.2 265 50.9
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 3.5e-69 265.8 213 63.4
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 7.9e-69 264.6 256 53.9
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 1.3e-68 263.8 264 51.5
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 3.9e-68 262.3 184 68.5
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 6.6e-68 261.5 240 55.8
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 1.5e-67 260.4 229 61.6
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 9.6e-67 257.7 254 51.6
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 3.1e-65 252.7 265 50.6
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 4.0e-65 252.3 240 57.5
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 6.9e-65 251.5 236 55.1
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 1.2e-64 250.8 200 63.5
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 2.6e-64 249.6 266 51.9
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.7e-61 239.6 265 49.8
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 1.0e-60 237.7 217 57.1
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 4.3e-59 232.3 248 48.8
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 2.1e-58 229.9 166 66.9
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 1.1e-57 227.6 251 48.2
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 5.3e-57 225.3 253 47.8
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 1.4e-54 217.2 168 65.5
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.6e-53 213.8 168 70.2
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 5.3e-49 198.7 189 54.5
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.0e-47 194.5 154 62.3
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 1.4e-41 174.1 262 36.6
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 6.9e-41 171.8 164 51.2
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 6.9e-41 171.8 164 51.2
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 6.9e-41 171.8 164 51.2
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 2.0e-40 170.2 148 56.1
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 8.5e-39 164.9 158 50.0
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 5.1e-36 155.6 124 55.6
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 5.1e-36 155.6 155 53.5
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 5.7e-35 152.1 257 38.1
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 7.4e-35 151.8 263 34.2
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 1.5e-32 144.1 207 39.1
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 3.4e-32 142.9 110 62.7
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 2.3e-28 130.2 121 52.9
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 2.0e-24 117.1 170 48.8
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 2.2e-23 113.6 96 57.3
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 1.4e-20 104.4 96 53.1
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 5.2e-20 102.4 98 53.1
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 3.7e-18 96.3 96 46.9
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.7e-15 87.4 81 63.0
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 3.8e-15 86.3 165 36.4
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 3.8e-15 86.3 161 35.4
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 4.2e-14 82.8 99 49.5
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 1.2e-13 81.3 77 57.1
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 1.4e-12 77.8 48 72.9
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 5.2e-12 75.9 67 53.7
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 1.3e-10 71.2 95 40.0
HanXRQChr12g0360941 Helianthus annuus HOM05D005673 ORTHO05D007081 7.2e-06 55.5 44 54.5


User provided reference genes

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