Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 3.3e-195 684.9 354 100.0
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 8.0e-189 663.7 354 97.2
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 9.2e-137 490.7 353 72.5
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 1.4e-132 476.9 358 70.7
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.2e-131 473.8 305 76.7
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 6.4e-130 468.0 361 68.7
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 2.4e-129 466.1 308 72.4
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 1.2e-128 463.8 301 75.4
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 7.8e-128 461.1 359 70.8
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 1.0e-127 460.7 355 66.5
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.7e-127 459.9 306 72.9
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 2.3e-127 459.5 302 71.5
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 3.9e-127 458.8 304 72.7
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 3.9e-127 458.8 302 73.5
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 6.6e-127 458.0 306 73.5
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 1.5e-126 456.8 305 73.8
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.9e-126 456.4 303 73.9
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 1.9e-126 456.4 302 72.2
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 5.6e-126 454.9 301 74.4
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 7.3e-126 454.5 353 68.3
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.3e-125 453.8 333 69.7
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 1.3e-125 453.8 302 73.2
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 1.6e-125 453.4 301 74.8
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 3.6e-125 452.2 303 72.6
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 1.1e-124 450.7 351 66.1
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.1e-124 450.7 353 66.0
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 2.4e-124 449.5 305 73.1
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 3.1e-124 449.1 362 67.7
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 3.1e-124 449.1 301 72.4
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 4.0e-124 448.7 307 71.3
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 6.9e-124 448.0 307 71.3
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 6.9e-124 448.0 307 71.3
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 1.2e-123 447.2 308 71.1
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 1.2e-123 447.2 362 66.3
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 2.0e-123 446.4 304 73.7
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 2.6e-123 446.0 305 72.5
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 4.5e-123 445.3 299 72.6
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 4.5e-123 445.3 358 64.5
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 4.5e-123 445.3 301 71.1
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 7.6e-123 444.5 359 65.2
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 9.9e-123 444.1 362 66.0
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 2.2e-122 443.0 303 71.9
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 2.2e-122 443.0 306 70.3
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 2.9e-122 442.6 303 72.3
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 2.9e-122 442.6 303 71.9
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 3.8e-122 442.2 306 70.9
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 3.8e-122 442.2 354 66.4
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 3.8e-122 442.2 305 70.8
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 4.9e-122 441.8 306 71.2
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 4.9e-122 441.8 357 63.0
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 8.4e-122 441.0 305 71.1
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 1.1e-121 440.7 305 71.1
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.4e-121 440.3 357 62.7
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 2.4e-121 439.5 306 68.3
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 2.4e-121 439.5 278 74.8
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 5.4e-121 438.3 301 72.1
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 1.2e-120 437.2 305 70.2
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 2.1e-120 436.4 306 70.3
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 2.1e-120 436.4 303 71.6
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 2.7e-120 436.0 302 69.9
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.7e-120 436.0 304 68.4
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 2.7e-120 436.0 304 70.7
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 3.5e-120 435.6 301 70.8
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 7.9e-120 434.5 306 69.6
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.3e-119 433.7 355 65.1
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 1.8e-119 433.3 302 68.9
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 1.8e-119 433.3 304 72.0
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 2.3e-119 433.0 304 72.0
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 3.9e-119 432.2 304 67.8
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 3.9e-119 432.2 309 69.6
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 5.1e-119 431.8 358 64.0
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 8.7e-119 431.0 355 66.8
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 9.6e-118 427.6 353 62.9
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 9.6e-118 427.6 388 58.5
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 1.2e-115 420.6 301 68.4
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 4.5e-115 418.7 303 69.6
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 4.5e-115 418.7 288 71.2
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.3e-114 417.2 304 71.1
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.7e-114 416.8 289 72.0
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 3.8e-114 415.6 285 69.8
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 4.9e-114 415.2 304 68.4
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 4.6e-112 408.7 360 63.3
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.8e-111 406.8 286 70.3
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 3.9e-111 405.6 359 63.8
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 5.1e-111 405.2 304 65.1
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 1.1e-110 404.1 302 66.6
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 2.5e-110 402.9 307 64.8
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 4.5e-107 392.1 354 61.9
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 3.8e-106 389.0 246 75.2
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 7.9e-104 381.3 290 69.0
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.8e-103 380.2 261 72.0
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 3.9e-103 379.0 358 57.8
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.3e-101 374.0 264 67.4
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 4.3e-94 349.0 237 71.3
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 7.4e-94 348.2 257 65.4
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 1.1e-92 344.4 244 69.3
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 2.5e-89 333.2 307 56.4
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 3.0e-87 326.2 302 52.3
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 5.1e-87 325.5 304 54.3
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 9.7e-86 321.2 303 57.4
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 4.8e-85 318.9 300 55.3
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 9.1e-76 288.1 357 52.9
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.6e-75 287.3 279 53.0
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 2.6e-75 286.6 307 52.4
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 1.9e-73 280.4 323 48.9
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 1.3e-69 267.7 208 66.3
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 3.0e-63 246.5 240 55.0
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.3e-61 241.1 297 49.8
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 2.9e-58 229.9 163 73.0
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 1.3e-53 214.5 172 62.8
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 5.0e-50 202.6 146 68.5
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 1.2e-48 198.0 373 38.1
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 1.7e-45 187.6 341 35.5
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 2.9e-45 186.8 182 57.7
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 1.2e-43 181.4 121 73.6
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 2.5e-41 173.7 195 51.8
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 2.6e-38 163.7 181 51.9
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 3.0e-26 123.6 68 83.8
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 2.4e-23 114.0 75 76.0
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 2.2e-13 80.9 62 62.9
PSO541G6250 Papaver somniferum HOM05D004736 ORTHO05D030424 1.9e-12 77.8 43 86.0
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 9.3e-12 75.5 45 84.4
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 3.5e-11 73.6 82 43.9
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 2.3e-10 70.9 101 40.6
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 3.9e-10 70.1 45 68.9
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-09 68.6 98 37.8
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 3.6e-08 63.5 39 76.9
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 3.1e-07 60.5 38 78.9
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.2e-06 58.5 52 59.6


User provided reference genes

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