Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 5.0e-218 761.1 485 100.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 9.6e-177 624.0 487 85.2
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 6.5e-125 451.8 411 66.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 8.0e-123 444.9 411 65.5
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.7e-62 243.8 401 43.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.0e-62 242.7 391 43.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.1e-61 239.6 401 43.4
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.9e-49 198.7 414 36.5
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.9e-46 189.1 349 39.8
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.9e-44 184.5 428 34.6
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.6e-43 181.4 413 36.8
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 6.9e-42 176.0 413 36.3
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.7e-40 171.4 405 34.1
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.6e-38 163.3 408 35.3
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.8e-37 161.4 424 33.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.8e-37 161.4 401 35.2
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.5e-36 157.5 399 33.3
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 2.5e-36 157.5 411 34.3
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.8e-35 153.3 398 33.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 6.3e-35 152.9 397 35.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 8.2e-35 152.5 422 32.9
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.4e-34 151.8 185 48.1
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 6.9e-34 149.4 402 34.6
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 9.0e-34 149.1 404 33.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 5.9e-33 146.4 404 32.7
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 7.7e-33 146.0 180 48.3
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.7e-32 144.8 414 32.9
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 3.8e-32 143.7 384 32.8
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.9e-31 141.4 194 47.9
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.5e-31 141.0 411 31.1
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.5e-31 141.0 357 33.3
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 3.2e-31 140.6 162 46.9
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 4.2e-31 140.2 407 31.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.2e-31 140.2 137 56.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 5.5e-31 139.8 352 31.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 9.4e-31 139.0 317 33.1
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.2e-30 138.7 409 32.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.6e-30 138.3 408 32.4
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.1e-30 137.9 205 42.9
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.1e-30 137.9 409 31.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-30 137.5 401 32.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.6e-30 137.1 390 31.8
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 4.6e-30 136.7 159 45.9
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.1e-30 136.3 186 44.6
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.9e-30 136.0 390 30.8
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.9e-30 136.0 159 45.9
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 7.9e-30 136.0 147 55.8
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.0e-29 135.6 354 33.3
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.0e-29 135.6 422 31.3
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.4e-29 135.2 396 32.1
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.4e-29 135.2 399 32.3
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.4e-29 135.2 399 32.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.8e-29 134.8 398 30.4
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 2.3e-29 134.4 396 30.3
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 3.0e-29 134.0 435 31.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 3.0e-29 134.0 380 35.3
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 3.9e-29 133.7 187 42.2
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 5.1e-29 133.3 367 32.4
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.1e-28 132.1 179 46.9
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.1e-28 132.1 320 34.1
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.5e-28 131.7 435 31.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.0e-28 131.3 204 40.7
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.0e-28 131.3 390 32.1
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.5e-28 131.0 381 31.5
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.5e-28 131.0 381 31.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.5e-28 131.0 152 46.7
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 5.7e-28 129.8 147 53.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 5.7e-28 129.8 194 42.8
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 5.7e-28 129.8 407 30.0
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 7.4e-28 129.4 402 31.3
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 7.4e-28 129.4 410 29.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 7.4e-28 129.4 167 47.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 7.4e-28 129.4 368 30.4
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.7e-28 129.0 152 46.1
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.3e-27 128.6 351 33.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-27 128.6 395 31.6
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.3e-27 128.6 171 43.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.7e-27 128.3 399 31.6
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.2e-27 127.9 151 52.3
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.2e-27 127.9 143 54.5
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.8e-27 127.5 350 33.4
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 3.7e-27 127.1 354 31.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.3e-27 126.3 166 48.8
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 6.3e-27 126.3 344 32.8
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.3e-27 126.3 324 33.6
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.2e-27 125.9 397 31.2
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.1e-26 124.0 157 49.7
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.1e-26 124.0 426 30.0
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 3.1e-26 124.0 384 32.0
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 3.1e-26 124.0 120 58.3
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 5.3e-26 123.2 154 51.3
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.3e-26 123.2 396 29.3
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 6.9e-26 122.9 131 48.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 9.1e-26 122.5 147 51.7
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.5e-25 121.7 121 54.5
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.5e-25 121.7 171 40.4
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.0e-25 121.3 154 53.2
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.0e-25 121.3 158 49.4
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.0e-25 121.3 132 50.0
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 3.4e-25 120.6 120 56.7
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 3.4e-25 120.6 120 56.7
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.9e-25 119.8 103 59.2
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.0e-24 119.0 103 59.2
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.3e-24 118.6 377 31.0
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.3e-24 118.6 379 30.3
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.7e-24 118.2 146 48.6
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.7e-24 118.2 383 32.1
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.2e-24 117.9 395 30.9
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 2.2e-24 117.9 425 28.2
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.8e-24 117.1 184 38.6
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 5.0e-24 116.7 120 49.2
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.5e-24 116.3 130 50.8
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 8.5e-24 115.9 137 48.2
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.1e-23 115.5 156 48.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.4e-23 115.2 174 40.8
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.2e-23 114.0 350 31.1
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 7.2e-23 112.8 172 37.2
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 9.4e-23 112.5 116 53.4
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.2e-22 112.1 381 28.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.6e-22 111.7 109 56.0
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.6e-22 111.7 140 48.6
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.1e-22 111.3 426 28.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.7e-22 110.2 170 43.5
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 4.7e-22 110.2 155 39.4
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 3.9e-21 107.1 140 40.7
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 6.7e-21 106.3 180 36.7
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.5e-20 105.1 156 40.4
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.4e-20 103.6 392 29.8
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 9.7e-20 102.4 117 51.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.7e-19 100.5 158 39.2
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.1e-18 97.4 87 55.2
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.1e-18 97.4 131 43.5
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 7.7e-17 92.8 111 45.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.4e-15 88.6 109 45.0
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 9.4e-15 85.9 383 28.5
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 6.1e-14 83.2 102 40.2
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.9e-13 80.5 123 35.0
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.9e-13 80.5 236 29.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 4.4e-12 77.0 83 48.2
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 4.4e-12 77.0 51 70.6
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.0e-08 63.5 110 31.8
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 4.2e-07 60.5 52 53.8
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 4.2e-07 60.5 52 53.8
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 7.2e-07 59.7 57 45.6
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 9.4e-07 59.3 78 35.9
Nn1g05401 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.6e-06 57.4 37 64.9


User provided reference genes

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