Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.3e-148 529.6 259 100.0
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 3.2e-147 525.0 259 99.2
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-137 492.7 260 92.3
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.5e-115 419.9 257 75.9
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.7e-111 406.4 257 75.5
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.7e-111 406.4 260 78.8
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.2e-111 406.0 258 75.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.7e-111 405.2 256 73.8
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 6.4e-111 404.4 256 75.4
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 4.1e-110 401.7 256 73.4
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 5.4e-110 401.4 257 73.9
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 9.2e-110 400.6 256 73.8
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-109 400.2 257 73.5
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 7.8e-109 397.5 257 73.5
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.7e-108 396.4 254 74.0
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.3e-108 396.0 257 72.8
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 6.6e-108 394.4 256 73.0
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 8.6e-108 394.0 256 73.8
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 2.5e-107 392.5 266 70.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 3.3e-107 392.1 258 72.1
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 5.6e-107 391.3 259 71.0
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 5.6e-107 391.3 262 72.1
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 7.3e-107 391.0 259 71.0
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.6e-106 389.8 276 68.1
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.8e-106 389.0 256 70.7
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.1e-105 387.1 256 72.3
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.4e-105 386.7 256 71.5
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.8e-105 386.3 258 70.5
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.8e-105 386.3 258 70.5
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.8e-105 386.3 259 70.3
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.1e-105 385.6 260 70.4
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.1e-105 385.6 256 70.7
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 4.0e-105 385.2 257 71.6
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.0e-105 385.2 255 71.0
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 4.0e-105 385.2 256 70.3
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 6.8e-105 384.4 256 71.5
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.2e-104 383.6 256 71.5
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.2e-104 383.6 267 68.2
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.2e-104 383.6 260 70.4
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.2e-104 383.6 256 71.5
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.0e-104 382.9 256 70.3
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.0e-104 382.9 254 68.9
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.4e-104 382.1 256 71.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 7.5e-104 380.9 255 71.4
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 7.5e-104 380.9 268 67.9
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-103 380.2 258 70.9
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.9e-103 379.0 265 68.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.9e-103 379.0 256 70.7
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.9e-103 379.0 267 66.7
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.9e-103 378.3 258 70.5
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.1e-102 377.1 263 70.7
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.9e-102 376.3 256 70.3
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 5.4e-102 374.8 256 68.4
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 9.2e-102 374.0 256 69.5
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.2e-101 373.6 256 69.9
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.6e-101 373.2 319 59.9
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.1e-101 372.9 256 67.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 2.7e-101 372.5 258 69.4
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.5e-101 372.1 256 69.1
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.5e-101 372.1 255 68.2
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.5e-101 372.1 255 68.2
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.5e-101 372.1 254 68.1
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.5e-101 372.1 256 68.4
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.6e-101 371.7 255 67.5
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.6e-101 371.7 252 69.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 6.0e-101 371.3 257 70.4
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.0e-100 370.5 257 70.4
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.0e-100 370.5 275 65.5
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.7e-100 369.8 256 68.4
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.7e-100 369.8 256 68.4
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.3e-100 369.4 256 68.8
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 5.1e-100 368.2 256 68.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-99 367.1 256 68.8
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-99 367.1 256 68.8
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.1e-99 367.1 256 69.1
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.5e-99 366.7 256 68.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.5e-99 365.9 256 69.1
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 4.3e-99 365.2 256 67.2
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 4.3e-99 365.2 256 68.4
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 7.3e-99 364.4 258 67.1
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 7.3e-99 364.4 260 66.9
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 9.5e-99 364.0 256 66.0
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.6e-98 363.2 262 65.6
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.6e-98 362.1 256 64.8
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 3.6e-98 362.1 265 66.8
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.1e-97 360.5 255 65.9
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.8e-97 359.8 259 67.6
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 2.4e-97 359.4 240 70.8
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.4e-97 359.4 262 64.1
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.2e-96 357.1 256 65.2
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.5e-96 356.7 291 60.8
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.4e-96 355.5 256 64.8
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 5.8e-96 354.8 257 65.8
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 7.6e-96 354.4 262 64.1
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.3e-95 353.6 256 66.8
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.2e-95 352.8 262 65.3
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.1e-94 350.5 256 66.0
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 4.2e-94 348.6 256 65.6
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 7.1e-94 347.8 257 65.8
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 7.1e-94 347.8 258 64.0
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 2.1e-93 346.3 273 61.5
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 7.8e-93 344.4 262 64.1
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 8.7e-92 340.9 211 75.4
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.1e-91 340.5 256 62.9
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.1e-91 340.5 212 74.1
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.5e-91 340.1 216 74.1
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.9e-91 339.7 211 77.3
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.3e-91 339.0 256 62.5
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.2e-90 337.0 258 64.0
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 6.2e-90 334.7 236 68.6
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.1e-89 332.4 260 61.2
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 9.0e-89 330.9 260 65.4
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.0e-88 329.7 256 62.1
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 4.4e-88 328.6 256 62.9
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 4.9e-87 325.1 195 78.5
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.4e-86 323.6 275 57.8
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.5e-85 318.9 211 70.6
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 7.3e-83 311.2 243 64.2
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.1e-82 309.7 212 66.5
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.4e-81 306.2 195 73.3
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.4e-79 297.7 195 70.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.9e-78 296.6 191 74.9
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.9e-78 296.6 184 75.0
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 1.0e-76 290.8 204 68.6
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.3e-76 290.4 191 70.2
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.3e-75 285.8 231 56.7
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 7.4e-75 284.6 256 55.9
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.1e-73 279.3 230 56.5
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 9.0e-73 277.7 171 77.2
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.2e-72 277.3 253 53.4
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 5.5e-70 268.5 226 59.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 7.1e-70 268.1 314 48.1
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 4.3e-67 258.8 261 50.2
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.1e-65 252.7 360 40.6
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 4.6e-61 238.8 182 63.2
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-56 223.4 234 49.6
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.6e-56 223.0 155 67.7
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.4e-54 214.5 269 45.4
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.0e-52 209.5 209 52.2
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.4e-51 204.9 179 54.2
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 8.2e-50 201.4 180 55.0
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.4e-46 190.7 146 63.0
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 4.4e-43 179.1 134 63.4
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.7e-42 176.0 252 38.1
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.8e-41 173.7 124 63.7
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 8.5e-39 164.9 126 61.1
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.7e-37 159.8 103 69.9
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.0e-36 157.9 319 33.9
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 3.9e-36 156.0 270 35.2
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.1e-30 137.9 166 49.4
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.9e-30 137.1 96 64.6
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.2e-30 136.3 193 40.9
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 5.7e-27 125.6 98 59.2
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.7e-27 124.8 126 49.2
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.4e-25 120.2 165 42.4
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-19 99.0 78 56.4
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.1e-17 92.8 137 39.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 9.1e-17 91.7 58 70.7
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 5.0e-15 85.9 51 80.4
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 5.0e-15 85.9 51 80.4
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.6e-15 85.5 80 53.8
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-13 81.3 55 69.1
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.2e-08 64.7 36 83.3
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 7.8e-08 62.0 44 56.8
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 7.8e-08 62.0 44 56.8
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.9e-07 60.1 51 54.9
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 6.6e-07 58.9 56 46.4


User provided reference genes

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