Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 2.8e-200 701.8 379 100.0
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.3e-197 693.0 379 98.4
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.1e-124 450.7 375 68.3
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.0e-122 442.2 384 67.7
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 4.0e-122 442.2 378 66.4
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.2e-121 440.7 379 64.4
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 7.6e-121 438.0 380 66.1
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 4.9e-120 435.3 381 65.4
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.4e-120 434.9 397 64.0
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.1e-119 434.1 380 64.2
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.9e-119 433.3 375 64.8
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 4.2e-119 432.2 399 63.2
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.1e-118 429.9 381 65.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 7.4e-116 421.4 384 62.5
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 6.2e-115 418.3 378 61.9
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 8.2e-115 417.9 382 61.0
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.8e-114 416.8 380 61.3
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 9.0e-114 414.5 384 62.8
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.6e-113 412.9 378 64.3
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 3.4e-113 412.5 380 61.8
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 4.5e-113 412.1 381 60.9
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.8e-113 411.8 380 63.7
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.7e-112 410.2 379 61.7
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.9e-112 408.7 378 61.4
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.9e-112 408.7 378 61.4
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 8.4e-112 407.9 378 60.8
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.1e-111 407.5 376 61.4
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.4e-111 407.1 378 61.1
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.4e-111 407.1 379 59.6
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.5e-111 406.4 380 59.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.5e-111 406.4 382 61.3
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 4.2e-111 405.6 378 60.1
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 1.2e-110 404.1 378 60.8
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.7e-110 402.9 380 62.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.7e-110 402.9 385 61.8
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.7e-110 402.9 378 60.6
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 7.9e-110 401.4 381 60.6
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.0e-109 401.0 383 60.8
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.8e-109 400.2 377 61.5
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.0e-109 399.4 380 60.8
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 3.9e-109 399.1 383 58.5
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 5.1e-109 398.7 380 60.8
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 5.1e-109 398.7 377 62.1
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 6.7e-109 398.3 377 62.1
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.5e-108 397.1 378 60.3
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 3.3e-108 396.0 380 59.5
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 4.3e-108 395.6 377 59.7
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 5.7e-108 395.2 378 59.3
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.7e-108 395.2 377 62.3
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 9.7e-108 394.4 381 60.6
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.6e-107 393.7 377 61.0
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.6e-107 393.7 385 59.7
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.8e-107 392.1 412 59.0
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 6.3e-107 391.7 374 61.8
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.1e-106 391.0 429 55.2
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.4e-106 390.6 383 57.7
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.4e-106 389.8 378 59.3
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.1e-106 389.4 377 61.5
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 5.3e-106 388.7 380 60.0
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 5.3e-106 388.7 375 60.5
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 6.9e-106 388.3 381 59.3
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.2e-105 387.5 379 57.3
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.5e-105 387.1 382 58.6
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.4e-105 386.0 376 57.4
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.4e-105 386.0 377 58.9
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.5e-105 385.6 376 57.4
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.0e-104 384.4 376 57.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.2e-104 383.3 378 57.1
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 2.2e-104 383.3 379 59.9
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 2.2e-104 383.3 378 59.5
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.9e-104 382.9 378 56.9
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 3.8e-104 382.5 381 58.5
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 6.5e-104 381.7 380 59.5
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 7.9e-102 374.8 382 56.5
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.8e-101 373.6 381 57.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.5e-100 369.8 378 56.9
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 4.3e-100 369.0 397 55.9
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.4e-98 363.2 374 55.3
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.1e-98 362.8 355 60.8
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.6e-97 359.8 400 54.5
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.7e-96 357.1 378 54.5
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 4.2e-95 352.4 358 57.0
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 6.1e-94 348.6 384 53.4
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 7.9e-94 348.2 402 52.7
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-92 344.4 379 57.0
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.6e-92 343.2 369 56.1
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 7.4e-92 341.7 383 52.5
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 3.7e-91 339.3 380 55.3
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.1e-90 337.8 395 50.9
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 9.1e-90 334.7 377 52.0
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.6e-89 333.2 384 54.4
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 3.4e-89 332.8 377 52.0
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 3.4e-89 332.8 380 52.4
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 3.8e-88 329.3 395 50.6
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.5e-88 328.2 382 53.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.5e-88 328.2 382 53.7
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 4.2e-87 325.9 382 51.6
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 4.2e-87 325.9 379 50.9
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 7.2e-87 325.1 446 46.6
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 7.2e-87 325.1 383 50.9
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 5.2e-85 318.9 393 49.1
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 8.8e-85 318.2 393 49.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 3.3e-84 316.2 398 49.2
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 5.7e-84 315.5 371 51.8
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 4.1e-82 309.3 396 49.5
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.7e-81 305.1 379 52.5
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 2.7e-78 296.6 395 48.1
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 2.7e-78 296.6 395 48.1
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 3.6e-78 296.2 393 47.3
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 6.1e-78 295.4 388 47.4
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 9.7e-76 288.1 391 47.3
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 3.7e-75 286.2 395 46.6
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.4e-74 284.3 395 46.3
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 3.1e-74 283.1 390 44.6
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 3.1e-66 256.5 254 57.9
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.7e-64 250.8 235 59.6
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 7.2e-63 245.4 325 50.2
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 3.4e-60 236.5 437 38.2
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.7e-59 234.2 378 42.9
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 9.2e-58 228.4 365 39.7
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.8e-56 223.0 189 64.0
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.5e-55 218.4 316 46.2
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.4e-50 203.8 299 45.8
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 5.2e-45 186.0 383 36.8
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 6.4e-43 179.1 225 51.1
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 8.1e-38 162.2 124 74.2
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.7e-35 153.3 118 69.5
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.5e-31 141.4 174 49.4
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.1e-18 98.6 410 27.8
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 5.4e-18 96.3 425 25.6
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.0e-16 92.0 62 69.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.1e-15 88.6 118 50.8
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 7.3e-15 85.9 102 46.1
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 1.8e-13 81.3 55 70.9
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 3.1e-13 80.5 55 72.7
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 4.9e-11 73.2 50 74.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 5.4e-10 69.7 514 22.0
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.3e-08 65.1 63 61.9
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 7.4e-07 59.3 407 24.8


User provided reference genes

Program Settings