Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.7e-148 529.3 259 100.0
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.2e-147 525.0 259 99.2
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.4e-136 488.0 260 91.5
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.6e-114 415.2 257 75.1
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.4e-110 403.3 256 75.4
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.4e-110 403.3 258 74.8
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.2e-110 402.1 255 73.7
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 3.2e-110 402.1 260 78.1
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 7.0e-110 401.0 255 74.9
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 4.6e-109 398.3 255 72.9
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 7.8e-109 397.5 255 73.7
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-108 397.1 256 73.4
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.3e-108 396.7 257 73.2
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.9e-108 395.2 257 72.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 8.6e-108 394.0 256 73.0
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 4.3e-107 391.7 254 73.2
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 7.3e-107 391.0 255 72.5
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 9.5e-107 390.6 255 73.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 3.6e-106 388.7 257 71.6
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 6.2e-106 387.9 266 69.5
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 6.2e-106 387.9 258 70.5
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 6.2e-106 387.9 261 71.6
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 8.1e-106 387.5 258 70.5
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.1e-105 385.6 255 70.2
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.0e-105 385.2 276 67.4
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 4.0e-105 385.2 256 71.1
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 5.2e-105 384.8 256 70.3
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 6.8e-105 384.4 255 71.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.2e-104 383.6 255 71.8
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.5e-104 383.3 257 70.4
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.5e-104 383.3 257 70.4
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 3.4e-104 382.1 267 67.8
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.4e-104 382.1 259 69.9
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.4e-104 382.1 255 70.2
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 3.4e-104 382.1 255 70.2
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 4.4e-104 381.7 256 71.1
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.8e-104 381.3 255 71.4
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 9.9e-104 380.6 255 71.4
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.3e-103 380.2 259 69.9
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.3e-103 380.2 255 71.0
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.2e-103 379.4 255 69.8
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.2e-103 379.4 253 68.4
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.7e-103 378.6 255 70.6
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 6.4e-103 377.9 254 70.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 8.3e-103 377.5 267 67.4
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-102 377.1 257 70.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 3.2e-102 375.6 264 67.8
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 3.2e-102 375.6 263 70.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.2e-102 375.6 255 70.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 3.2e-102 375.6 266 66.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.1e-102 375.2 257 70.4
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.1e-101 372.9 255 69.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 4.6e-101 371.7 255 68.2
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.0e-100 370.5 255 69.0
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.3e-100 370.2 258 69.8
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.3e-100 370.2 257 70.0
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.3e-100 370.2 255 69.4
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.3e-100 370.2 252 68.7
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-100 369.8 255 67.5
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.7e-100 369.8 319 59.6
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.0e-100 369.0 255 69.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.0e-100 369.0 254 68.1
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.0e-100 369.0 254 68.1
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.0e-100 369.0 253 68.0
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 3.0e-100 369.0 257 68.9
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.0e-100 369.0 255 68.2
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.9e-100 368.6 254 67.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.9e-100 368.6 258 67.8
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 6.6e-100 367.9 255 68.2
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-99 367.1 255 68.2
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.1e-99 367.1 274 65.0
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.9e-99 366.3 255 67.8
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 7.3e-99 364.4 255 68.6
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 7.3e-99 364.4 255 68.6
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 7.3e-99 364.4 255 69.0
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 9.5e-99 364.0 255 67.8
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-98 362.5 255 67.1
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 2.8e-98 362.5 255 68.2
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.8e-98 362.5 255 68.6
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 6.2e-98 361.3 257 66.9
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.1e-98 360.9 259 66.4
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 8.1e-98 360.9 255 65.9
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.4e-97 360.1 261 65.1
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.1e-97 359.0 255 64.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.1e-97 359.0 255 65.5
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 4.0e-97 358.6 264 66.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.2e-97 358.2 240 70.4
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.2e-96 357.1 258 67.4
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.0e-96 356.3 261 63.6
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 4.4e-96 355.1 291 60.5
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 7.6e-96 354.4 255 65.1
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.2e-95 352.8 255 64.7
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 4.9e-95 351.7 256 65.6
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 6.4e-95 351.3 261 63.6
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.1e-94 350.5 255 66.3
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 3.2e-94 349.0 262 64.9
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.2e-93 347.1 256 65.2
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.6e-93 346.7 253 66.0
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.6e-93 346.7 257 65.8
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 4.6e-93 345.1 257 63.8
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.0e-92 344.0 273 61.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 6.6e-92 341.3 261 63.6
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.9e-91 339.7 211 74.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 4.3e-91 338.6 211 76.8
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.2e-90 337.0 255 62.4
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.2e-90 337.0 215 73.5
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.2e-90 337.0 211 73.5
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.8e-90 335.9 255 62.4
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.6e-90 335.5 258 63.6
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.8e-89 333.2 236 68.2
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.0e-88 329.7 256 60.9
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 7.6e-88 327.8 259 65.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.2e-87 326.2 254 61.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 4.9e-87 325.1 254 62.6
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 5.4e-86 321.6 194 77.8
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 9.3e-86 320.9 271 57.6
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 7.8e-85 317.8 211 70.1
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.6e-82 310.1 243 63.8
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.8e-81 306.6 211 65.9
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.6e-80 302.8 194 72.7
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 5.4e-78 295.0 191 74.3
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 9.3e-78 294.3 194 70.1
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.6e-77 293.5 183 74.3
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 7.9e-77 291.2 204 68.6
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 3.0e-76 289.3 191 69.6
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 7.4e-75 284.6 231 56.7
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 3.7e-74 282.3 255 55.7
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 6.9e-73 278.1 230 56.5
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 4.5e-72 275.4 251 53.4
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.7e-71 273.5 171 76.0
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 9.3e-70 267.7 226 59.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.6e-69 266.9 314 47.8
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 4.3e-67 258.8 260 50.4
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-64 250.0 359 40.4
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 7.9e-61 238.0 182 63.2
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-56 223.4 234 49.6
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 7.7e-56 221.5 154 67.5
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.1e-53 211.8 268 45.1
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.8e-52 210.3 244 46.7
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.7e-50 203.8 179 53.6
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.8e-49 200.3 180 54.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 4.2e-46 189.1 146 62.3
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 7.4e-43 178.3 134 63.4
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.8e-41 173.7 250 38.0
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.1e-41 172.6 124 63.7
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-38 164.1 126 61.1
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.1e-37 160.2 103 69.9
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 2.3e-36 156.8 319 33.9
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 8.8e-36 154.8 270 34.8
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 4.2e-30 136.0 165 49.1
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 7.2e-30 135.2 95 64.2
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.4e-30 134.8 193 40.4
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.7e-26 124.0 126 49.2
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.7e-26 124.0 98 58.2
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.8e-25 120.6 165 42.4
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-19 99.0 78 56.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.4e-17 92.4 102 49.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.2e-16 91.3 137 38.7
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.6e-15 85.5 80 53.8
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-14 84.0 50 80.0
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-14 84.0 50 80.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-13 81.3 55 69.1
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 4.5e-08 62.8 35 82.9
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 7.8e-08 62.0 44 56.8
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 7.8e-08 62.0 44 56.8
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 5.0e-07 59.3 51 54.9
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 6.6e-07 58.9 56 46.4


User provided reference genes

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