Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 3572.3 1822 100.0
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 3520.3 1822 98.5
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2663.3 1840 74.9
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2639.8 1844 74.9
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2591.2 1845 74.2
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2537.3 1838 72.7
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2513.0 1841 71.3
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2512.3 1880 70.2
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2491.1 1838 70.8
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2479.9 1819 71.6
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2478.7 1837 71.0
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2474.1 1856 69.6
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2456.0 1845 70.0
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2455.2 1826 70.6
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2451.4 1835 71.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2445.2 1838 70.4
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2444.8 1818 70.8
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2442.5 1853 69.5
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2440.2 1841 70.1
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2439.5 1838 70.6
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2437.5 1832 69.9
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2419.8 1840 69.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2406.3 1872 68.5
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2402.9 1837 69.4
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2397.9 1836 68.5
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2395.5 1813 70.0
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2382.8 1840 68.5
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2380.9 1840 69.1
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2379.7 1822 69.2
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2377.1 1825 68.6
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2375.9 1843 68.3
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2373.6 1822 69.0
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2353.9 1837 68.6
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2350.5 1836 67.6
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2344.3 1837 67.3
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2333.1 1844 67.8
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2331.6 1834 66.8
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2330.4 1838 66.9
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2328.9 1853 67.7
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2328.9 1838 67.4
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2327.4 1907 65.5
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2323.9 1838 66.3
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2322.4 1832 66.5
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2318.5 1848 67.4
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2312.3 1856 67.5
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2310.4 1848 67.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2308.5 1832 66.3
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2305.4 1833 66.9
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2303.9 1804 67.9
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2300.0 1909 64.8
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2298.9 1847 67.1
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2295.0 1798 68.0
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2290.0 1828 65.7
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2288.1 1838 66.4
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2288.1 1848 67.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2283.4 1837 66.2
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2261.1 1834 66.0
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2258.4 1835 66.2
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2248.4 1842 65.3
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2248.4 1842 65.3
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2244.5 1838 64.7
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2242.6 1855 65.6
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2236.8 1834 65.6
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2231.1 1840 65.3
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2211.4 1834 65.5
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2188.7 1833 64.3
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2178.3 1832 64.6
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2172.1 1832 64.3
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2171.0 1829 63.8
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2160.2 1828 63.8
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2146.3 1728 65.2
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2135.1 1835 63.4
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2125.1 1855 62.4
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2109.0 1826 63.5
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2103.9 1831 62.8
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2083.9 1875 61.2
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2072.0 1829 62.2
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2071.6 1835 61.8
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2060.0 1833 61.8
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2058.5 1829 61.3
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2056.6 1833 61.5
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2048.1 1824 62.7
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2038.1 1844 61.0
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2026.5 1836 61.0
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2016.9 1837 60.9
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2016.9 1832 60.7
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1971.1 1841 60.1
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1958.3 1829 61.0
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1955.3 1767 61.0
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1926.4 1824 59.3
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1921.0 1823 59.0
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1921.0 1823 59.0
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1912.5 1845 58.5
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1887.5 1841 56.5
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1868.2 1819 58.1
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1838.5 1843 55.3
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1723.8 1691 56.5
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1692.2 1369 65.7
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1645.9 1489 60.6
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1593.2 1797 52.5
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1568.5 1220 67.8
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1543.9 1342 61.7
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1534.2 1333 61.8
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1533.9 1571 56.0
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1525.8 1379 61.0
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1435.6 1797 49.4
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1433.3 1305 59.5
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1370.9 1985 44.0
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1360.1 1192 60.7
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1277.3 1372 54.6
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1275.8 1219 60.5
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1243.0 1834 42.9
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1218.8 986 66.4
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1193.7 1142 58.3
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1190.6 1955 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1189.9 1925 41.2
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1158.7 2007 38.5
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.8e-289 1000.3 872 61.9
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 1.6e-256 891.0 1384 42.1
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 8.4e-234 815.5 633 66.0
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 6.3e-221 772.7 1325 40.5
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 2.6e-203 714.1 478 75.7
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 1.2e-200 705.3 526 70.2
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 3.7e-197 693.7 487 76.2
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 4.0e-183 647.1 466 71.5
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-180 637.9 611 57.4
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 6.2e-168 596.7 375 81.3
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 3.9e-162 577.4 619 52.8
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 4.0e-159 567.4 429 65.0
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 9.9e-158 562.8 331 87.0
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 1.6e-155 555.4 360 76.7
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 3.8e-149 534.3 556 54.1
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.2e-147 529.3 361 73.4
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 5.2e-143 513.8 482 59.8
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 5.3e-135 487.3 382 69.4
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.2e-124 451.4 324 67.0
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.4e-119 436.0 442 56.3
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 2.8e-112 411.8 261 84.7
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 7.2e-108 397.1 398 54.5
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.4e-106 392.9 259 75.3
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 5.7e-73 281.2 302 57.6
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.8e-72 278.9 299 57.5
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.9e-68 266.2 304 56.9
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 7.0e-47 194.5 123 78.0
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 6.2e-43 181.4 141 63.8
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 2.4e-23 116.3 103 60.2
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 1.1e-20 107.5 70 80.0
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 1.5e-17 97.1 71 70.4
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 9.9e-17 94.4 70 67.1
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 2.4e-15 89.7 70 64.3
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 4.2e-15 89.0 203 30.0
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.6e-14 87.0 77 62.3
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 3.0e-13 82.8 67 61.2
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 8.7e-13 81.3 67 59.7
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.3e-12 79.0 39 79.5
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.1e-11 76.6 34 88.2
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.1e-11 76.6 34 88.2
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.1e-11 76.6 34 88.2
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.1e-11 76.6 34 88.2
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 2.1e-11 76.6 34 88.2
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 4.8e-11 75.5 94 51.1
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 3.1e-10 72.8 445 22.0
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 7.6e-09 68.2 179 29.1
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 3.2e-07 62.8 37 81.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 4.2e-07 62.4 185 28.6


User provided reference genes

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