Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 5.0e-226 787.7 480 100.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 8.6e-178 627.5 487 85.2
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.5e-121 439.9 396 64.1
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.2e-118 431.0 396 63.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.6e-62 244.6 382 41.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.7e-62 243.8 397 42.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.9e-62 242.7 400 43.0
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.6e-54 218.0 385 39.7
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.6e-46 191.4 334 38.9
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 5.1e-45 186.4 398 35.7
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 5.6e-44 183.0 398 36.4
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 4.7e-43 179.9 410 33.4
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 9.9e-41 172.2 363 36.1
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 6.4e-40 169.5 427 33.5
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.3e-37 161.0 367 34.9
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.6e-37 159.1 381 34.1
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.5e-36 157.5 400 33.8
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.5e-36 157.5 396 32.6
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.3e-36 156.8 386 34.2
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 5.6e-36 156.4 406 34.0
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 4.7e-35 153.3 364 34.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.7e-35 153.3 364 34.3
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 6.2e-35 152.9 413 32.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.1e-34 152.1 190 45.8
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.8e-34 151.4 380 33.4
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.8e-34 151.4 386 33.9
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.1e-34 150.6 381 33.3
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.0e-34 150.2 406 33.7
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.2e-34 149.8 380 33.2
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 8.9e-34 149.1 409 30.8
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 8.9e-34 149.1 397 33.5
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.5e-33 148.3 387 32.3
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.5e-33 148.3 395 32.9
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.6e-33 147.5 384 34.4
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 4.4e-33 146.7 421 33.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.6e-33 146.0 387 32.8
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.3e-32 145.2 387 33.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.2e-32 144.4 422 32.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 8.4e-32 142.5 201 46.3
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.4e-32 142.5 386 32.1
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 8.4e-32 142.5 305 34.1
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.1e-31 142.1 402 31.8
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.9e-31 141.4 392 30.9
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.4e-31 141.0 386 32.6
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 2.4e-31 141.0 386 32.6
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 4.2e-31 140.2 204 41.7
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.2e-31 140.2 131 58.0
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 2.7e-30 137.5 396 30.3
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.5e-30 137.1 381 32.0
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 6.0e-30 136.3 187 41.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 6.0e-30 136.3 393 31.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.0e-30 136.3 382 31.7
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 7.8e-30 136.0 365 32.6
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 7.8e-30 136.0 368 31.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.3e-29 135.2 350 32.6
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.3e-29 135.2 367 32.2
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.7e-29 134.8 354 33.1
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 3.9e-29 133.7 375 32.0
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.9e-29 133.7 363 33.1
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 3.9e-29 133.7 179 45.3
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 3.9e-29 133.7 405 30.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 6.6e-29 132.9 192 41.7
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 8.7e-29 132.5 360 32.8
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 8.7e-29 132.5 382 31.4
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.9e-28 131.3 370 32.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 2.5e-28 131.0 371 32.9
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 5.6e-28 129.8 389 31.6
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.6e-28 129.8 157 43.9
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 5.6e-28 129.8 396 30.8
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 5.6e-28 129.8 392 29.8
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.3e-28 129.4 306 34.0
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 7.3e-28 129.4 397 30.7
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 7.3e-28 129.4 191 39.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 9.6e-28 129.0 171 46.8
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 9.6e-28 129.0 157 43.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.3e-27 128.6 201 40.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.3e-27 128.6 149 52.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.6e-27 128.3 185 43.2
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.6e-27 128.3 392 30.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.8e-27 127.5 161 46.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.6e-27 127.1 158 45.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.6e-27 127.1 160 51.2
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 3.6e-27 127.1 141 53.9
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.6e-27 127.1 369 30.4
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 6.2e-27 126.3 362 31.8
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-26 125.6 170 48.8
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-26 125.2 152 45.4
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.4e-26 125.2 124 53.2
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.8e-26 124.8 132 55.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.4e-26 124.4 368 32.1
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.3e-26 123.2 152 44.7
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.9e-26 122.9 155 52.3
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 6.9e-26 122.9 143 52.4
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 6.9e-26 122.9 379 29.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.6e-25 120.9 183 38.3
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 3.4e-25 120.6 129 54.3
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.4e-25 120.6 373 29.5
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 4.4e-25 120.2 156 49.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 5.8e-25 119.8 120 56.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.8e-25 119.8 389 28.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 7.6e-25 119.4 336 31.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 7.6e-25 119.4 380 31.8
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.3e-24 118.6 120 55.8
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.3e-24 118.6 120 55.8
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.3e-24 118.6 119 50.4
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.7e-24 118.2 367 31.9
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.2e-24 117.9 165 44.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 3.8e-24 117.1 149 46.3
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.4e-23 115.2 148 43.9
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.9e-23 114.8 103 56.3
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 3.2e-23 114.0 103 56.3
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 5.4e-23 113.2 144 46.5
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 7.1e-23 112.8 161 39.8
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 7.1e-23 112.8 415 27.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.6e-22 111.7 176 36.9
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.7e-22 110.9 130 48.5
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.7e-22 110.9 181 41.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.5e-22 110.5 185 35.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 4.6e-22 110.2 107 54.2
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.3e-21 107.8 116 50.9
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 3.9e-21 107.1 109 53.2
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.9e-21 107.1 153 46.4
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.1e-21 106.7 154 44.8
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.5e-20 105.1 151 37.7
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.5e-20 105.1 423 26.5
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.3e-19 102.1 180 36.1
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.3e-19 102.1 155 40.0
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.8e-19 100.9 153 43.8
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.1e-18 99.0 388 29.1
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.9e-18 96.3 153 36.6
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.0e-17 94.7 157 39.5
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.4e-17 94.0 129 41.9
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.8e-17 93.2 106 47.2
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 4.9e-16 90.1 109 45.9
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 6.4e-16 89.7 365 28.8
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.4e-15 87.8 224 30.8
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.5e-14 84.0 112 38.4
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 4.3e-12 77.0 123 33.3
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 6.2e-11 73.2 51 66.7
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.1e-10 72.4 82 46.3
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.5e-07 60.1 105 31.4
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.1e-06 58.2 79 35.4
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 3.5e-06 57.4 51 52.9
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 3.5e-06 57.4 51 52.9
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 7.9e-06 56.2 57 43.9


User provided reference genes

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