Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 2.5e-211 738.8 447 100.0
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.6e-144 516.2 313 95.8
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.8e-106 389.8 308 73.1
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.0e-104 383.6 306 70.6
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 5.5e-102 375.6 305 70.5
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.1e-101 373.6 305 70.5
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 1.6e-98 364.0 317 66.9
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.6e-98 364.0 316 67.7
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.9e-96 355.5 294 70.1
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.7e-95 354.0 302 67.5
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.7e-95 354.0 297 68.7
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 2.2e-95 353.6 311 67.5
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.9e-95 353.2 296 67.6
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.1e-94 351.3 306 67.3
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 3.2e-94 349.7 316 66.1
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.2e-93 347.8 303 68.0
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.6e-93 345.9 303 67.7
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.0e-92 344.7 294 67.7
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.0e-92 344.7 310 65.8
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 3.9e-92 342.8 310 65.2
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 8.8e-92 341.7 300 66.0
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 7.4e-91 338.6 280 68.9
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.3e-90 337.8 306 65.0
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.8e-89 334.0 310 63.2
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.1e-89 332.8 296 65.9
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.1e-89 332.8 292 66.8
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 6.9e-89 332.0 304 64.5
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 6.9e-89 332.0 301 65.4
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.2e-88 331.3 303 65.7
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.2e-88 331.3 300 65.7
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.2e-88 331.3 281 68.3
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 1.5e-88 330.9 296 65.9
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 7.7e-88 328.6 303 63.7
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 3.8e-87 326.2 297 65.7
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.4e-86 324.3 317 63.1
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.5e-86 323.6 270 67.8
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 3.2e-86 323.2 315 61.6
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 5.5e-86 322.4 311 61.1
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.1e-85 320.5 307 64.2
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 4.7e-85 319.3 314 62.4
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 4.7e-85 319.3 273 65.9
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 3.0e-84 316.6 294 63.3
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 5.1e-84 315.8 339 58.7
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 2.6e-83 313.5 265 68.7
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 3.7e-82 309.7 303 62.4
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 4.8e-82 309.3 332 58.7
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.8e-82 309.3 303 62.0
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.1e-81 308.1 318 64.5
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 7.0e-81 305.4 303 62.0
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.0e-80 303.9 298 62.4
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 2.2e-79 300.4 308 60.1
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.9e-79 300.1 315 58.7
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 8.5e-79 298.5 271 64.2
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.1e-78 298.1 280 63.6
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 3.2e-78 296.6 293 64.2
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 7.2e-78 295.4 298 61.4
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 7.2e-78 295.4 299 61.5
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 2.1e-77 293.9 301 63.1
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.0e-76 291.6 263 62.4
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 2.3e-76 290.4 301 62.1
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.3e-76 290.4 304 63.8
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 3.0e-76 290.0 312 61.9
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 3.9e-76 289.7 264 63.6
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.5e-75 287.7 263 61.6
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.5e-75 287.7 309 59.5
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 5.7e-75 285.8 318 59.1
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 7.4e-75 285.4 274 62.0
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 4.8e-74 282.7 294 61.6
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.1e-73 281.6 264 65.2
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 3.1e-73 280.0 259 64.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.3e-73 279.3 246 66.3
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 4.5e-72 276.2 257 62.3
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 4.5e-72 276.2 305 55.1
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.3e-71 274.6 263 60.5
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 8.5e-71 271.9 259 63.3
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.9e-70 270.8 298 58.4
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 5.5e-70 269.2 305 56.7
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-69 268.1 310 54.5
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.2e-69 268.1 257 58.8
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 2.1e-69 267.3 310 54.2
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.7e-69 266.9 261 63.2
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.6e-69 266.5 272 58.5
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.7e-69 266.2 272 58.1
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.8e-68 264.2 263 58.6
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.8e-68 264.2 308 58.1
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.8e-68 264.2 308 58.1
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.2e-67 261.5 305 55.7
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 2.6e-67 260.4 313 57.8
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 2.6e-67 260.4 308 57.1
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 7.5e-67 258.8 264 57.6
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.8e-66 256.1 272 57.4
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 3.1e-65 253.4 312 54.5
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 7.0e-65 252.3 296 52.7
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 2.2e-63 247.3 308 52.9
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.5e-62 243.8 219 65.8
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 4.7e-61 239.6 272 60.7
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.0e-60 238.4 315 49.5
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.8e-60 237.7 313 53.7
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.3e-60 237.3 200 67.0
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 3.0e-60 236.9 320 52.5
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 5.2e-60 236.1 234 61.1
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 5.2e-60 236.1 322 52.2
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.4e-59 233.0 317 51.7
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 8.3e-58 228.8 260 54.6
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-57 228.4 215 61.9
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.4e-57 228.0 214 62.6
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 2.0e-56 224.2 191 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 3.8e-55 219.9 232 56.9
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.8e-55 219.9 216 61.1
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 3.8e-55 219.9 202 61.4
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 8.6e-55 218.8 200 61.5
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 8.6e-55 218.8 200 61.5
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.9e-54 217.6 216 60.2
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 3.3e-54 216.9 215 57.7
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 3.3e-54 216.9 215 57.7
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 7.2e-54 215.7 235 54.5
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 8.3e-50 202.2 245 53.1
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.3e-47 194.1 289 44.6
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 5.0e-47 193.0 240 53.3
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 1.1e-46 191.8 150 70.0
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.5e-46 191.4 261 55.6
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 4.3e-46 189.9 303 42.9
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.5e-46 188.7 310 44.2
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 2.1e-45 187.6 450 36.2
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.0e-43 181.0 314 47.8
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.4e-41 174.9 307 44.6
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.9e-41 174.5 157 64.3
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.4e-41 174.1 163 62.6
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 7.8e-40 169.1 310 41.3
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.5e-38 164.9 302 43.0
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 7.3e-38 162.5 158 60.1
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 4.7e-37 159.8 299 43.1
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 7.5e-35 152.5 147 64.6
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.7e-23 114.8 134 51.5
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.4e-20 104.4 177 40.1
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 8.9e-20 102.4 94 63.8
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.3e-18 98.6 144 45.8
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.1e-12 77.4 56 66.1
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 9.0e-12 75.9 89 56.2
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.4e-09 68.6 52 69.2
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 3.0e-07 60.8 58 67.2
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.6e-07 59.7 60 51.7
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.9e-06 58.2 60 51.7
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.3e-06 57.4 62 50.0
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 9.6e-06 55.8 64 50.0


User provided reference genes

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