Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 7.1e-248 860.1 435 100.0
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.0e-241 839.7 433 98.2
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 2.6e-165 585.9 435 68.7
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 3.2e-163 578.9 430 68.8
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 2.6e-157 559.3 435 66.4
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 1.3e-151 540.4 424 65.3
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.1e-150 535.8 424 65.3
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 5.3e-150 535.0 426 65.5
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 2.6e-149 532.7 437 64.1
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 1.3e-148 530.4 435 63.9
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 8.4e-148 527.7 436 63.3
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.4e-147 526.2 428 65.0
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 7.1e-147 524.6 434 64.3
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 7.1e-147 524.6 428 64.5
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 9.3e-147 524.2 435 63.9
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.6e-146 523.5 434 64.1
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.6e-146 523.5 426 64.8
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 6.0e-146 521.5 435 63.2
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 5.1e-145 518.5 435 61.8
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 6.6e-145 518.1 428 63.8
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 6.6e-145 518.1 426 64.6
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 6.6e-145 518.1 435 63.7
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 2.5e-144 516.2 424 62.7
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 9.6e-144 514.2 422 64.9
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 3.6e-143 512.3 435 61.6
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 8.1e-143 511.1 424 62.7
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 8.1e-143 511.1 436 61.0
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 1.1e-142 510.8 471 58.8
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 9.0e-142 507.7 435 61.1
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.5e-141 506.9 434 60.8
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 5.8e-141 505.0 435 61.8
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 1.3e-140 503.8 437 60.4
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 2.2e-140 503.1 438 61.2
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 3.8e-140 502.3 436 60.8
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 4.9e-140 501.9 423 61.5
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.9e-139 500.0 442 61.1
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 2.4e-139 499.6 414 62.1
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 2.4e-139 499.6 517 53.6
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 4.6e-138 495.4 430 61.4
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 6.7e-137 491.5 436 59.9
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 1.9e-136 490.0 420 62.6
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 4.3e-136 488.8 420 61.7
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 5.6e-136 488.4 424 61.8
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 5.6e-136 488.4 461 57.0
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 1.6e-135 486.9 451 57.2
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.6e-135 486.9 419 62.5
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 3.7e-135 485.7 435 60.0
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 3.7e-135 485.7 434 60.4
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.4e-134 483.8 435 60.0
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 1.8e-134 483.4 422 60.0
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 2.4e-134 483.0 436 59.2
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 3.1e-134 482.6 440 58.9
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 4.0e-134 482.3 427 60.9
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 4.0e-134 482.3 433 60.0
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 6.9e-134 481.5 421 61.3
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 9.0e-134 481.1 420 60.5
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 2.6e-133 479.6 419 59.2
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 3.4e-133 479.2 422 59.5
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 4.5e-133 478.8 444 58.3
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.7e-132 476.9 429 59.4
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.7e-132 476.9 423 59.6
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 2.2e-132 476.5 450 56.9
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 3.8e-132 475.7 421 60.3
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 4.9e-132 475.3 432 60.2
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 8.4e-132 474.6 433 59.1
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.9e-131 473.4 439 57.9
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 3.2e-131 472.6 433 59.1
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 5.5e-131 471.9 474 55.3
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 3.5e-130 469.2 426 60.1
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 3.5e-130 469.2 419 59.4
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.8e-129 466.8 447 55.7
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 3.9e-129 465.7 434 56.0
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 8.7e-129 464.5 449 56.6
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 2.5e-128 463.0 421 57.7
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 4.3e-128 462.2 440 58.2
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 7.4e-128 461.5 421 56.5
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.6e-127 460.3 437 56.5
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 2.1e-127 459.9 439 56.5
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 3.7e-127 459.1 448 56.7
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 4.8e-127 458.8 441 58.5
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 1.8e-126 456.8 430 59.3
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 5.3e-126 455.3 434 56.2
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 4.9e-124 448.7 434 53.7
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 8.4e-124 448.0 429 57.3
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 1.9e-123 446.8 437 57.4
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 4.2e-123 445.7 423 57.9
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 4.2e-123 445.7 425 55.8
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 7.1e-123 444.9 421 56.3
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 4.6e-122 442.2 420 56.4
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 6.1e-122 441.8 439 55.1
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 7.9e-122 441.4 428 57.0
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 2.3e-121 439.9 432 55.8
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 3.0e-121 439.5 439 57.2
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 3.9e-121 439.1 294 73.8
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 3.2e-115 419.5 406 56.7
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 4.3e-112 409.1 334 63.2
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 2.0e-104 383.6 417 48.9
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 7.0e-102 375.2 437 51.3
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 2.9e-100 369.8 435 46.9
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.2e-99 366.3 301 63.1
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 1.2e-98 364.4 349 57.0
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 2.0e-96 357.1 439 49.7
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 1.2e-93 347.8 238 70.6
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.1e-91 341.3 390 48.5
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 3.8e-84 316.2 237 66.7
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 5.2e-81 305.8 426 41.1
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 1.1e-78 298.1 374 46.5
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 1.4e-78 297.7 459 40.1
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 1.8e-78 297.4 374 46.3
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 7.0e-78 295.4 434 41.7
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 1.6e-77 294.3 372 46.2
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-72 278.1 199 66.8
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 8.3e-71 271.9 371 45.0
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 2.4e-70 270.4 382 42.9
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 1.4e-65 254.6 292 50.7
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 2.6e-56 223.8 420 36.7
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 4.1e-54 216.5 157 66.9
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 2.8e-50 203.8 227 50.7
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 3.1e-49 200.3 333 39.6
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.2e-48 198.4 156 61.5
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.1e-45 187.6 297 43.8
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 4.3e-43 179.9 431 31.3
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 2.6e-40 170.6 296 41.9
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 4.0e-33 146.7 125 58.4
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.2e-29 135.2 244 39.8
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 2.7e-29 134.0 107 63.6
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 1.7e-28 131.3 126 59.5
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 1.7e-28 131.3 126 59.5
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 5.1e-28 129.8 210 41.0
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 1.5e-27 128.3 89 69.7
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 1.9e-27 127.9 318 32.7
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 2.5e-27 127.5 215 40.0
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 2.8e-26 124.0 233 31.3
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 8.1e-26 122.5 485 27.0
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.1e-25 122.1 89 67.4
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 1.5e-24 118.2 227 39.6
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 3.0e-20 104.0 353 30.3
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 2.5e-19 100.9 123 52.0
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 8.1e-18 95.9 71 62.0
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.4e-17 95.1 71 62.0
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.8e-17 94.7 298 29.5
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 9.0e-17 92.4 266 29.3
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 3.8e-15 87.0 84 57.1
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 3.8e-15 87.0 159 42.8
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 9.6e-11 72.4 58 65.5
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 2.8e-10 70.9 131 35.1
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 8.2e-10 69.3 70 51.4
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 1.2e-08 65.5 173 28.9
Aqoxy3G03109 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 2.0e-08 64.7 177 27.1
Pp3c5_3050 Physcomitrium patens HOM05D005323 ORTHO05D006820 2.6e-08 64.3 181 26.5
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 3.4e-08 63.9 241 29.0
Oeu040654.1 Olea europaea HOM05D004826 ORTHO05D006367 4.5e-08 63.5 99 42.4
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 4.5e-08 63.5 47 63.8
Solyc04g005020.3 Solanum lycopersicum HOM05D000453 ORTHO05D000387 4.5e-08 63.5 184 27.2
Sopen04g001030 Solanum pennellii HOM05D000453 ORTHO05D000387 5.9e-08 63.2 184 27.2
arahy.Tifrunner.gnm1.ann1.C0LV86 Arachis hypogaea HOM05D000453 ORTHO05D000387 7.6e-08 62.8 188 28.2
PGSC0003DMG400001922 Solanum tuberosum HOM05D000453 ORTHO05D000387 7.6e-08 62.8 184 26.6
QL10p012364 Quercus lobata HOM05D000453 ORTHO05D000387 1.0e-07 62.4 177 29.4
Potri.010G026800 Populus trichocarpa HOM05D002999 ORTHO05D003137 1.3e-07 62.0 221 25.8
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.3e-07 62.0 159 28.3
Hma1.2p1_0002F.1_g002820 Hydrangea macrophylla HOM05D000453 ORTHO05D000387 2.9e-07 60.8 173 27.2
Prupe.5G153000 Prunus persica HOM05D002332 ORTHO05D002509 2.9e-07 60.8 228 24.1
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 3.8e-07 60.5 85 44.7
Lj4g0006234 Lotus japonicus HOM05D000453 ORTHO05D000387 5.0e-07 60.1 210 27.1
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 6.5e-07 59.7 225 27.1
TPR.G37519 Trifolium pratense HOM05D000453 ORTHO05D000387 6.5e-07 59.7 198 25.3
TWI81G0436 Tripterygium wilfordii HOM05D000453 ORTHO05D000387 8.4e-07 59.3 173 26.6
Sabra08G0163200 Salix brachista HOM05D002999 ORTHO05D003137 1.1e-06 58.9 231 24.2
CSS0013650 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D000387 1.4e-06 58.5 186 26.9
Eucgr.K02880 Eucalyptus grandis HOM05D000453 ORTHO05D000387 1.4e-06 58.5 174 27.6
Nitab4.5_0000279g0010 Nicotiana tabacum HOM05D003006 ORTHO05D003438 1.9e-06 58.2 199 25.6
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 2.5e-06 57.8 85 43.5
SMO340G0134 Selaginella moellendorffii HOM05D000453 ORTHO05D000387 2.5e-06 57.8 213 27.7
Cc04_g03860 Coffea canephora HOM05D003006 ORTHO05D003438 3.2e-06 57.4 252 26.6
SHI30700 Sapria himalayana HOM05D005151 ORTHO05D006322 3.2e-06 57.4 233 26.6
VMungo1309G1244 Vigna mungo HOM05D000453 ORTHO05D000387 3.2e-06 57.4 153 30.1
Nn3g17017 Nelumbo nucifera HOM05D000453 ORTHO05D000387 4.2e-06 57.0 180 28.9
DCAR_025471 Daucus carota HOM05D003006 ORTHO05D003438 5.5e-06 56.6 196 26.0
Manes.05G192200 Manihot esculenta HOM05D000645 ORTHO05D000494 5.5e-06 56.6 241 26.1
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 5.5e-06 56.6 175 26.9
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 7.2e-06 56.2 179 24.6
Glyma.05G010900 Glycine max HOM05D003006 ORTHO05D003438 7.2e-06 56.2 229 26.6
A05p18810 Brassica napus HOM05D003006 ORTHO05D003438 9.3e-06 55.8 204 26.0
Gohir.D06G057000 Gossypium hirsutum HOM05D003006 ORTHO05D003438 9.3e-06 55.8 212 26.9


User provided reference genes

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