Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 4.7e-100 367.9 184 100.0
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 1.6e-95 352.8 184 96.2
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 4.7e-68 261.5 184 72.8
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.9e-65 252.3 184 71.7
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.6e-63 246.5 184 70.1
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 6.0e-63 244.6 183 72.1
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 6.0e-63 244.6 183 72.1
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.7e-62 243.0 184 70.1
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.7e-62 243.0 184 72.3
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 2.3e-62 242.7 186 71.0
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.3e-62 242.7 184 70.1
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 3.9e-62 241.9 185 68.6
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 5.1e-62 241.5 184 68.5
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 6.6e-62 241.1 184 69.6
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 1.5e-61 240.0 184 67.9
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.5e-61 240.0 184 69.0
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.5e-61 240.0 184 69.0
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 1.9e-61 239.6 184 69.0
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.5e-61 239.2 186 68.8
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.5e-61 239.2 186 68.8
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.3e-61 238.4 184 68.5
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 7.3e-61 237.7 185 69.2
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 9.6e-61 237.3 184 69.6
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.6e-60 236.5 185 67.0
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.1e-60 236.1 184 68.5
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 4.8e-60 235.0 185 68.6
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.2e-60 234.6 170 72.4
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 8.1e-60 234.2 185 67.6
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 8.1e-60 234.2 184 66.3
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 1.1e-59 233.8 184 69.0
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 1.4e-59 233.4 184 67.9
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.8e-59 233.0 184 68.5
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 2.4e-59 232.6 183 67.2
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 2.4e-59 232.6 185 68.6
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.1e-59 232.3 184 66.8
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 3.1e-59 232.3 184 66.8
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 6.9e-59 231.1 184 69.0
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.2e-58 230.3 186 67.2
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.5e-58 229.9 184 66.8
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 2.0e-58 229.6 180 67.2
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 7.6e-58 227.6 185 68.6
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 7.6e-58 227.6 184 66.8
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 1.3e-57 226.9 186 66.7
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 2.2e-57 226.1 185 66.5
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 2.2e-57 226.1 184 66.8
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 2.2e-57 226.1 188 64.9
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 2.9e-57 225.7 191 64.9
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 2.9e-57 225.7 150 76.0
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 2.9e-57 225.7 188 68.1
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 3.8e-57 225.3 183 66.7
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 3.8e-57 225.3 156 72.4
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 8.4e-57 224.2 184 67.9
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 8.4e-57 224.2 184 65.8
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 1.9e-56 223.0 186 64.5
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 4.2e-56 221.9 185 69.2
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.6e-55 219.9 186 66.1
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 2.1e-55 219.5 166 66.9
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 3.0e-54 215.7 186 63.4
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.0e-54 215.7 225 56.4
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 3.0e-54 215.7 131 76.3
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 3.0e-54 215.7 184 64.1
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.1e-54 214.9 177 63.3
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 5.1e-54 214.9 184 64.7
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 6.6e-54 214.5 187 64.2
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.1e-53 213.8 182 63.7
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 1.5e-53 213.4 184 63.6
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 1.5e-53 213.4 184 63.6
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 2.5e-53 212.6 121 82.6
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 2.5e-53 212.6 174 63.8
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 3.3e-53 212.2 184 64.1
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 4.3e-53 211.8 185 61.1
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 4.3e-53 211.8 180 62.8
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.3e-53 211.8 176 62.5
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 4.3e-53 211.8 180 61.1
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 5.6e-53 211.5 184 62.5
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 5.6e-53 211.5 185 63.2
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 5.6e-53 211.5 185 63.2
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 7.3e-53 211.1 186 63.4
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 7.3e-53 211.1 184 63.6
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 7.3e-53 211.1 189 61.9
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.3e-52 210.3 162 67.9
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 1.3e-52 210.3 184 62.5
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.3e-52 210.3 185 62.2
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.3e-52 210.3 184 63.0
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.3e-52 210.3 186 64.0
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.3e-52 210.3 184 64.1
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 2.8e-52 209.1 183 63.4
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 2.8e-52 209.1 184 62.5
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 2.8e-52 209.1 184 62.5
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 4.8e-52 208.4 184 61.4
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 4.8e-52 208.4 184 62.5
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 4.8e-52 208.4 184 62.5
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 4.8e-52 208.4 184 62.5
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 8.1e-52 207.6 184 60.9
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 8.1e-52 207.6 171 64.3
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.1e-51 207.2 184 62.0
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.4e-51 206.8 192 60.9
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.4e-51 206.1 182 61.0
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 2.4e-51 206.1 187 60.4
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 3.1e-51 205.7 198 58.1
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 3.4e-50 202.2 185 60.5
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 4.5e-50 201.8 184 61.4
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 7.6e-50 201.1 185 61.1
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 9.9e-50 200.7 184 60.3
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.3e-49 200.3 115 81.7
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.3e-49 200.3 184 60.3
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 8.4e-49 197.6 127 76.4
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 1.9e-48 196.4 152 68.4
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.9e-48 196.4 187 58.8
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 5.4e-48 194.9 296 44.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 7.1e-48 194.5 190 58.4
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.8e-46 189.9 188 59.0
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.8e-46 189.9 294 42.5
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 8.7e-46 187.6 184 59.8
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 4.3e-45 185.3 143 66.4
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 1.3e-44 183.7 119 73.1
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.1e-44 183.0 184 54.9
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.8e-43 179.9 182 53.3
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 1.2e-42 177.2 158 62.0
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.9e-41 172.6 185 56.2
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 4.2e-40 168.7 123 67.5
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 5.5e-40 168.3 218 51.4
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 9.3e-40 167.5 178 53.9
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 3.3e-37 159.1 171 52.0
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 2.8e-36 156.0 132 60.6
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.4e-32 143.7 82 87.8
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 4.6e-31 138.7 87 78.2
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.8e-30 136.7 87 78.2
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.8e-30 136.7 82 81.7
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.9e-29 133.3 87 73.6
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 5.7e-29 131.7 154 44.2
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 4.8e-28 128.6 82 79.3
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.1e-27 127.5 182 46.7
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 3.1e-27 125.9 97 60.8
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 8.5e-25 117.9 87 71.3
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 3.6e-23 112.5 118 50.8
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 6.7e-22 108.2 98 57.1
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 2.7e-15 86.3 54 74.1
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.0e-14 84.3 96 51.0
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 3.9e-14 82.4 98 52.0
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.7e-14 81.6 108 47.2
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 2.2e-12 76.6 54 70.4
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.0e-09 67.8 63 47.6
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 8.0e-07 58.2 62 51.6
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 5.2e-06 55.5 101 39.6


User provided reference genes

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