Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 1.9e-180 636.0 385 100.0
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 9.0e-170 600.5 389 90.7
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.5e-84 317.4 369 55.3
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.9e-82 310.5 407 56.8
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.2e-81 307.8 377 56.2
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.5e-76 290.8 376 54.3
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 4.4e-76 289.3 394 50.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.7e-75 287.3 364 54.9
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.5e-73 279.6 381 49.1
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 6.0e-73 278.9 376 48.9
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.3e-72 277.7 349 52.4
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.7e-72 277.3 392 53.6
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.3e-72 276.9 381 49.1
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.3e-72 276.9 344 58.1
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 3.0e-72 276.6 377 51.7
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 2.5e-71 273.5 377 56.5
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.5e-71 273.5 367 57.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.6e-71 272.3 381 48.6
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.3e-70 271.2 398 52.8
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 2.1e-70 270.4 377 53.3
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 6.2e-70 268.9 369 48.5
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 6.2e-70 268.9 389 53.2
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.4e-69 267.7 375 50.1
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 6.9e-69 265.4 367 50.7
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 5.8e-68 262.3 344 56.7
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.2e-65 254.6 365 46.8
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.2e-65 254.6 381 49.3
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.6e-65 254.2 371 47.4
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 2.7e-65 253.4 373 51.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 4.6e-65 252.7 371 47.2
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 5.1e-64 249.2 340 49.1
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.5e-63 246.9 368 45.7
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 5.6e-63 245.7 341 51.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 7.4e-63 245.4 365 46.6
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.3e-62 244.6 392 44.1
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-62 244.6 344 51.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.6e-62 244.2 363 45.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.1e-62 243.8 365 47.1
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.7e-62 243.0 389 44.2
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 6.2e-62 242.3 357 51.8
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 8.1e-62 241.9 368 45.4
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.4e-61 241.1 389 44.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.4e-61 240.4 337 46.6
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 4.0e-61 239.6 373 45.3
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 6.9e-61 238.8 391 47.6
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 9.0e-61 238.4 367 46.0
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.6e-60 236.9 409 48.2
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.6e-60 236.9 365 45.5
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.5e-60 236.1 341 50.1
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 9.9e-60 235.0 367 45.8
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.3e-59 234.6 392 49.5
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.2e-59 233.8 395 49.9
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.8e-59 233.0 389 43.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.9e-59 232.6 338 46.2
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 6.4e-59 232.3 343 50.4
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.9e-58 230.7 369 43.9
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.9e-58 230.7 355 51.3
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.4e-58 230.3 402 49.0
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.2e-58 229.9 346 52.9
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 5.5e-58 229.2 388 50.3
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.5e-58 229.2 346 48.8
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 6.0e-57 225.7 375 45.1
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 3.0e-56 223.4 392 43.1
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 5.1e-56 222.6 394 46.2
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 5.6e-55 219.2 407 43.7
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.6e-54 217.6 370 43.2
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.6e-54 217.6 344 49.4
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.7e-54 216.5 348 48.3
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 3.1e-53 213.4 373 43.2
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 4.0e-53 213.0 379 41.7
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 9.0e-53 211.8 261 51.7
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 9.0e-53 211.8 345 46.7
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.2e-52 211.5 354 44.4
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 4.5e-52 209.5 378 42.9
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.2e-51 207.2 367 43.3
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.1e-50 204.9 403 44.2
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.9e-50 204.1 376 41.8
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.9e-50 204.1 393 40.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 5.5e-50 202.6 406 44.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 5.5e-50 202.6 406 44.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 5.5e-50 202.6 406 44.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.6e-49 201.1 381 41.2
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 6.0e-49 199.1 409 41.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 6.0e-49 199.1 370 40.5
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 6.0e-49 199.1 389 45.8
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.0e-48 198.4 387 40.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.3e-48 198.0 403 42.2
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.3e-48 198.0 403 42.2
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.8e-48 197.6 386 43.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 3.9e-48 196.4 386 43.5
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 3.9e-48 196.4 370 45.4
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.1e-48 196.1 372 40.6
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 6.7e-48 195.7 408 43.9
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 6.7e-48 195.7 408 43.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 9.7e-47 191.8 402 41.3
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 9.7e-47 191.8 380 42.6
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 9.7e-47 191.8 377 43.2
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.8e-46 190.3 389 41.6
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 2.8e-46 190.3 379 39.6
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 6.3e-46 189.1 352 39.2
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.1e-45 186.8 362 44.2
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 5.3e-45 186.0 340 40.3
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 5.3e-45 186.0 354 42.4
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.0e-45 185.3 422 38.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.2e-44 184.9 366 41.8
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.6e-44 183.7 184 59.8
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.6e-44 183.7 361 42.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.6e-44 183.7 410 39.5
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.4e-44 183.3 394 45.9
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.0e-43 181.8 354 46.0
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.9e-43 180.3 364 43.4
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.5e-42 177.2 421 39.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.2e-42 176.4 389 39.6
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 9.3e-42 175.3 383 41.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.2e-41 174.9 261 49.8
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.2e-41 174.9 380 41.3
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-41 174.9 380 41.3
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 2.7e-41 173.7 393 40.7
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.4e-40 171.4 349 47.0
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.3e-40 170.6 346 39.9
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 7.4e-39 165.6 350 37.4
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.3e-38 164.9 374 38.8
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.8e-37 161.0 151 65.6
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.8e-37 161.0 414 38.9
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.4e-37 160.6 274 48.2
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.3e-37 159.5 178 57.3
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.3e-37 159.5 317 39.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 6.9e-37 159.1 367 38.7
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.3e-32 144.1 398 34.2
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.8e-32 142.1 412 36.2
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.7e-31 139.4 381 39.4
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 9.7e-31 138.7 381 35.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.4e-29 134.8 308 36.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 2.5e-26 124.0 344 35.8
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.9e-24 116.7 360 36.9
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 3.3e-23 113.6 231 40.7
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 5.0e-19 99.8 244 39.3
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.6e-17 94.7 78 64.1
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 4.8e-14 83.2 350 30.0
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 9.1e-13 79.0 225 35.1
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 3.2e-10 70.5 160 38.1
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 4.7e-09 66.6 148 41.9
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 3.0e-08 63.9 82 48.8
MBI10_g23168_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 2.0e-07 61.2 133 40.6
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 7.5e-07 59.3 176 31.8
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 8.3e-06 55.8 276 26.1


User provided reference genes

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