Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1430.2 726 100.0
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1176.8 728 83.1
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1159.8 729 81.9
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1149.8 759 77.9
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1097.8 761 74.6
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 8.7e-299 1030.0 763 69.3
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 8.1e-289 996.9 762 67.8
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 2.6e-287 991.9 757 67.9
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 4.2e-285 984.6 755 67.7
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 6.7e-283 977.2 754 65.9
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 1.1e-282 976.5 765 66.7
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 1.1e-282 976.5 758 67.0
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 1.4e-280 969.5 763 66.3
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 4.1e-280 968.0 730 67.5
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 1.3e-278 963.0 751 67.1
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 2.2e-278 962.2 757 66.2
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 5.5e-277 957.6 760 65.0
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 1.9e-274 949.1 757 65.7
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 4.3e-274 948.0 758 65.3
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 9.7e-274 946.8 758 65.2
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 3.4e-271 938.3 751 64.7
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 3.4e-271 938.3 779 64.3
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.2e-269 931.8 764 63.9
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 4.2e-269 931.4 761 64.1
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 7.2e-269 930.6 756 64.2
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 1.2e-268 929.9 759 64.6
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 4.6e-268 927.9 768 63.3
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 5.1e-267 924.5 768 63.5
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 8.8e-267 923.7 754 64.3
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 2.0e-266 922.5 761 64.1
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 2.8e-265 918.7 750 62.9
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 3.7e-265 918.3 761 63.7
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 4.8e-265 917.9 762 63.1
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 8.2e-265 917.1 754 64.2
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 8.2e-265 917.1 757 63.4
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 3.1e-264 915.2 755 63.0
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 5.3e-264 914.4 752 62.8
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 6.9e-264 914.1 745 63.1
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 9.1e-264 913.7 762 63.0
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 9.1e-264 913.7 763 62.9
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 1.2e-263 913.3 766 62.4
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.4e-263 911.8 766 63.4
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 4.5e-263 911.4 755 64.2
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 2.2e-262 909.1 762 62.1
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 3.8e-262 908.3 756 62.3
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 1.4e-261 906.4 749 63.2
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 1.2e-260 903.3 768 62.4
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 2.7e-260 902.1 781 61.6
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.1e-260 901.0 787 62.1
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 6.1e-260 901.0 768 62.2
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 6.1e-260 901.0 760 62.6
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 7.9e-260 900.6 748 62.3
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 8.8e-259 897.1 758 62.3
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 4.4e-258 894.8 752 62.5
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.8e-256 889.4 758 62.4
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 4.1e-256 888.3 754 61.7
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.8e-254 881.7 809 60.3
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 5.0e-254 881.3 753 60.6
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 6.5e-254 880.9 745 61.5
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 8.5e-254 880.6 752 61.8
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 7.2e-253 877.5 739 61.4
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 4.7e-252 874.8 754 62.6
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 6.1e-252 874.4 744 60.9
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 5.7e-250 867.8 744 60.2
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 1.7e-249 866.3 747 59.7
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 1.7e-249 866.3 747 59.7
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.8e-249 865.5 768 59.9
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 5.3e-248 861.3 741 60.7
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 5.3e-248 861.3 740 59.9
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.2e-247 860.1 740 59.9
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 1.0e-246 857.1 763 61.1
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 3.8e-246 855.1 768 58.3
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 3.8e-246 855.1 763 60.9
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 8.5e-246 854.0 744 59.7
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.9e-245 852.8 746 61.9
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 4.2e-245 851.7 757 60.2
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 6.1e-244 847.8 751 61.1
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 4.0e-243 845.1 753 59.5
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.8e-240 836.3 758 60.4
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 2.7e-239 832.4 720 59.2
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 7.2e-237 824.3 514 77.0
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.6e-236 823.2 744 59.0
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 3.6e-236 822.0 510 77.5
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 1.6e-231 806.6 931 50.9
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.1e-229 800.4 680 63.2
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 4.7e-228 795.0 511 74.2
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 4.4e-226 788.5 690 59.6
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.9e-225 785.0 753 56.2
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 2.4e-224 782.7 757 56.5
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.5e-213 746.9 643 62.8
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 2.5e-213 746.1 759 52.8
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 1.5e-210 736.9 807 49.1
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 6.6e-206 721.5 768 53.1
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 1.5e-202 710.3 628 59.6
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 7.6e-202 708.0 757 52.7
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 4.9e-201 705.3 755 52.8
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.1e-200 704.1 833 46.5
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 3.3e-197 692.6 744 51.9
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 5.6e-197 691.8 733 49.1
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.2e-194 684.1 737 52.1
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 4.0e-187 659.1 732 50.7
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.9e-185 652.9 740 50.1
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.7e-183 646.4 732 50.0
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.6e-183 645.6 732 50.1
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.1e-179 634.4 714 49.4
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 2.2e-169 600.1 751 43.3
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 2.1e-167 593.6 740 49.2
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 3.3e-157 559.7 334 78.1
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 5.7e-133 479.2 460 60.0
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.8e-116 423.7 409 54.3
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 3.6e-111 406.8 451 51.7
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 8.1e-87 325.9 217 71.9
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 9.9e-85 318.9 241 65.6
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 3.8e-84 317.0 667 31.9
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 2.7e-82 310.8 182 78.6
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 1.9e-80 304.7 772 29.1
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 1.7e-73 281.6 666 31.1
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 2.1e-50 204.9 370 41.4
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.5e-48 198.7 137 68.6
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.8e-47 193.7 132 69.7
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.8e-47 193.7 170 60.6
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 2.4e-46 191.4 284 47.5
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 6.1e-42 176.8 244 48.8
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 2.3e-41 174.9 244 48.4
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 3.9e-41 174.1 128 67.2
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 9.1e-38 162.9 109 69.7
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 2.2e-28 131.7 215 42.3
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 4.4e-24 117.5 183 45.9
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.7e-23 115.5 141 46.8
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.2e-23 115.2 160 50.0
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 3.3e-16 91.3 66 65.2
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 6.3e-15 87.0 508 21.3
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.8e-14 85.5 55 67.3
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 2.4e-14 85.1 62 67.7
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 7.0e-14 83.6 93 52.7
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 3.2e-11 74.7 124 43.5
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 2.7e-10 71.6 59 57.6
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 4.7e-10 70.9 148 35.1
CBR_g40786 Chara braunii HOM05D002279 ORTHO05D002644 4.4e-08 64.3 482 18.9
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 3.7e-07 61.2 371 21.0
Carub.0001s0323 Capsella rubella HOM05D002279 ORTHO05D002644 8.3e-07 60.1 385 21.8
arahy.Tifrunner.gnm1.ann1.9ZI5E8 Arachis hypogaea HOM05D002279 ORTHO05D002644 1.1e-06 59.7 341 20.8
arahy.Tifrunner.gnm1.ann1.GB2CGG Arachis hypogaea HOM05D002279 ORTHO05D002644 1.1e-06 59.7 341 20.8
CANSAT35G1932 Cannabis sativa HOM05D002279 ORTHO05D002644 1.8e-06 58.9 570 17.7
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 2.4e-06 58.5 369 22.8
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 2.4e-06 58.5 342 20.8
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 3.1e-06 58.2 478 18.8
HPP92_020285 Vanilla planifolia HOM05D002279 ORTHO05D002644 4.1e-06 57.8 356 19.9
PSO339G5562 Papaver somniferum HOM05D002279 ORTHO05D002644 9.1e-06 56.6 254 21.7


User provided reference genes

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