Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 2.4e-105 386.0 265 100.0
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 5.6e-86 321.6 264 87.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 3.4e-51 206.1 124 84.7
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.8e-51 205.3 124 84.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 4.9e-50 202.2 124 83.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 6.4e-50 201.8 122 85.2
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 8.4e-50 201.4 156 74.4
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.1e-49 201.1 124 83.1
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.9e-49 200.3 261 51.7
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.9e-49 200.3 129 80.6
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.4e-49 199.9 124 83.1
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.2e-49 199.1 124 79.8
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.2e-49 199.1 124 79.8
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 4.2e-49 199.1 125 80.8
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 7.1e-49 198.4 124 83.1
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 7.1e-49 198.4 124 81.5
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 9.3e-49 198.0 123 82.9
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 9.3e-49 198.0 125 80.0
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.2e-48 197.6 125 80.8
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.1e-48 196.8 124 81.5
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.7e-48 196.4 134 79.9
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 2.7e-48 196.4 125 79.2
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.7e-48 196.4 125 79.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.7e-48 196.4 125 79.2
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 3.5e-48 196.1 124 82.3
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 6.0e-48 195.3 124 80.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 7.8e-48 194.9 124 81.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.3e-47 194.1 124 79.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.3e-47 194.1 124 79.0
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.7e-47 193.7 192 62.5
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.7e-47 193.7 124 78.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.0e-47 193.0 205 53.7
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 3.0e-47 193.0 124 79.0
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 5.1e-47 192.2 174 65.5
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.1e-47 192.2 178 65.2
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 6.6e-47 191.8 141 69.5
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.1e-46 191.0 124 76.6
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.5e-46 190.7 194 60.3
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.5e-46 190.7 124 76.6
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.5e-46 190.7 124 76.6
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.9e-46 190.3 207 55.1
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.9e-46 190.3 207 55.1
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-46 190.3 124 77.4
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-46 190.3 124 77.4
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.9e-46 190.3 123 77.2
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.5e-46 189.9 124 79.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.3e-46 189.5 128 78.1
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 4.3e-46 189.1 199 58.3
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 7.3e-46 188.3 205 55.6
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 7.3e-46 188.3 124 76.6
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 7.3e-46 188.3 259 48.6
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 9.6e-46 188.0 125 76.0
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 9.6e-46 188.0 199 56.8
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-45 187.6 124 78.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.3e-45 187.6 191 62.8
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.6e-45 187.2 124 77.4
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.6e-45 187.2 124 77.4
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.6e-45 187.2 124 75.0
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.6e-45 187.2 124 78.2
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.1e-45 186.8 205 55.6
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.8e-45 186.4 138 76.1
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 3.6e-45 186.0 125 77.6
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.6e-45 186.0 135 76.3
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 3.6e-45 186.0 208 54.3
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 3.6e-45 186.0 199 59.3
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 6.2e-45 185.3 169 63.9
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 6.2e-45 185.3 124 77.4
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 8.1e-45 184.9 199 57.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.1e-44 184.5 125 73.6
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.1e-44 184.5 125 76.0
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.4e-44 184.1 119 78.2
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.4e-44 184.1 200 60.5
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.4e-44 183.3 159 65.4
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.1e-44 183.0 204 56.9
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.1e-44 183.0 123 77.2
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 5.3e-44 182.2 125 72.8
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 5.3e-44 182.2 207 57.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 6.9e-44 181.8 123 76.4
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 9.0e-44 181.4 199 57.3
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 9.0e-44 181.4 144 70.1
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 9.0e-44 181.4 126 73.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.2e-43 181.0 124 78.2
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.2e-43 181.0 124 77.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.2e-43 181.0 134 74.6
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.5e-43 180.6 197 56.9
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-43 180.3 124 73.4
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.0e-43 180.3 174 62.1
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.6e-43 179.9 207 54.6
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.8e-43 178.7 124 75.0
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 5.8e-43 178.7 123 71.5
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 7.6e-43 178.3 124 71.8
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 7.6e-43 178.3 198 57.1
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 7.6e-43 178.3 122 77.0
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 7.6e-43 178.3 124 72.6
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.3e-42 177.6 124 71.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.3e-42 177.6 124 71.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.3e-42 177.6 147 67.3
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.3e-42 177.6 165 63.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.9e-42 176.4 124 71.0
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.9e-42 176.4 124 71.0
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.8e-42 176.0 124 70.2
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 4.9e-42 175.6 121 72.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 6.4e-42 175.3 123 71.5
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 6.4e-42 175.3 124 70.2
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 8.4e-42 174.9 124 70.2
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.1e-41 174.5 111 81.1
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 9.3e-41 171.4 116 77.6
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.6e-40 170.6 115 76.5
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.6e-40 170.6 123 69.1
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.6e-40 169.1 221 51.1
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.0e-39 167.9 101 83.2
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 3.0e-39 166.4 118 78.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 7.4e-38 161.8 131 65.6
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 9.0e-36 154.8 205 48.3
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.2e-35 154.5 122 67.2
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.2e-35 154.5 97 76.3
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 4.5e-35 152.5 105 72.4
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 5.8e-35 152.1 129 64.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.0e-34 151.4 100 73.0
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.9e-34 149.8 106 75.5
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 8.4e-34 148.3 155 56.8
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.2e-33 146.4 187 52.9
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.1e-33 145.2 124 59.7
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 6.0e-32 142.1 156 54.5
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-31 141.4 127 62.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.3e-31 141.0 105 66.7
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-31 141.0 99 73.7
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.0e-31 139.8 125 61.6
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-31 139.4 109 67.0
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 5.1e-31 139.0 101 74.3
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.1e-29 133.7 135 57.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.1e-29 133.7 135 57.0
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 4.8e-29 132.5 125 57.6
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-28 130.6 131 55.7
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 6.9e-28 128.6 84 81.0
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.2e-27 127.9 126 63.5
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.4e-27 126.3 85 76.5
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 5.8e-27 125.6 124 58.9
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.0e-26 124.8 84 76.2
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-26 124.4 96 78.1
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.4e-25 120.9 85 74.1
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 2.5e-25 120.2 128 53.9
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.6e-24 117.5 100 56.0
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.8e-23 114.0 82 73.2
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 3.9e-23 112.8 81 69.1
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 4.1e-20 102.8 78 69.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 7.9e-16 88.6 115 41.7
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.1e-14 84.7 73 60.3
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.3e-14 82.8 50 78.0
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 3.7e-13 79.7 99 40.4
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 4.1e-12 76.3 120 49.2
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-11 74.3 51 72.5
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.0e-10 71.6 65 53.8
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 6.5e-10 68.9 143 44.8
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 7.2e-09 65.5 94 42.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 3.0e-07 60.1 39 66.7
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-06 57.4 36 69.4
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 9.7e-06 55.1 52 55.8


User provided reference genes

Program Settings