Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4116 Papaver somniferum HOM05D003142 ORTHO05D003600 2.2e-80 302.4 167 100.0
PSO421G0455 Papaver somniferum HOM05D003142 ORTHO05D003600 9.0e-66 253.8 165 82.4
PSO104G0224 Papaver somniferum HOM05D003142 ORTHO05D003600 7.6e-65 250.8 168 82.1
PSO104G0149 Papaver somniferum HOM05D003142 ORTHO05D003600 2.2e-64 249.2 168 81.5
Aqoxy7G00984 Aquilegia oxysepala HOM05D003142 ORTHO05D003600 1.2e-41 173.7 151 61.6
Nn6g35659 Nelumbo nucifera HOM05D003142 ORTHO05D003600 1.3e-40 170.2 158 57.0
PSO384G2166 Papaver somniferum HOM05D003142 ORTHO05D003600 3.8e-40 168.7 173 64.2
TAR624G0191 Trochodendron aralioides HOM05D003142 ORTHO05D003600 5.0e-40 168.3 155 59.4
Rhsim08G0241500 Rhododendron simsii HOM05D003142 ORTHO05D003600 2.5e-39 166.0 132 65.9
PGSC0003DMG401004894 Solanum tuberosum HOM05D003142 ORTHO05D003600 9.3e-39 164.1 138 62.3
vmacro15060 Vaccinium macrocarpon HOM05D003142 ORTHO05D003600 1.6e-38 163.3 146 61.6
Solyc06g063020.4 Solanum lycopersicum HOM05D003142 ORTHO05D003600 2.1e-38 162.9 139 61.9
Migut.I01108 Erythranthe guttata HOM05D003142 ORTHO05D003600 3.6e-38 162.2 155 58.1
Nitab4.5_0027818g0010 Nicotiana tabacum HOM05D003142 ORTHO05D003600 3.6e-38 162.2 136 63.2
GSVIVG01016711001 Vitis vinifera HOM05D003142 ORTHO05D003600 4.6e-38 161.8 160 55.6
Nitab4.5_0003137g0050 Nicotiana tabacum HOM05D003142 ORTHO05D003600 7.9e-38 161.0 136 62.5
Dinv20407 Davidia involucrata HOM05D003142 ORTHO05D003600 1.0e-37 160.6 152 59.2
Sopen06g022470 Solanum pennellii HOM05D003142 ORTHO05D003600 3.9e-37 158.7 139 60.4
CSS0002964 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 5.1e-37 158.3 163 54.6
CSS0037213 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 5.1e-37 158.3 163 54.6
Actinidia21804 Actinidia chinensis HOM05D003142 ORTHO05D003600 1.5e-36 156.8 128 65.6
FAN09G1984 Fragaria x ananassa HOM05D003142 ORTHO05D003600 3.3e-36 155.6 132 63.6
FAN14G2660 Fragaria x ananassa HOM05D003142 ORTHO05D003600 3.3e-36 155.6 132 63.6
CiPaw.01G215300 Carya illinoinensis HOM05D003142 ORTHO05D003600 7.4e-36 154.5 160 52.5
FvH4_6g35210 Fragaria vesca HOM05D003142 ORTHO05D003600 1.3e-35 153.7 132 62.9
Prupe.3G037000 Prunus persica HOM05D003142 ORTHO05D003600 1.7e-35 153.3 133 61.7
Cc04_g01010 Coffea canephora HOM05D003142 ORTHO05D003600 8.2e-35 151.0 155 54.2
MD09G1177700 Malus domestica HOM05D003142 ORTHO05D003600 8.2e-35 151.0 132 59.8
FAN02G2173 Fragaria x ananassa HOM05D000945 ORTHO05D003600 1.1e-34 150.6 132 63.6
FAN05G5623 Fragaria x ananassa HOM05D003142 ORTHO05D003600 1.8e-34 149.8 132 62.9
MBI13_g01659_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 5.3e-34 148.3 155 52.3
RcHm_v2.0_Chr2g0146551 Rosa chinensis HOM05D003142 ORTHO05D003600 1.2e-33 147.1 161 53.4
HanXRQChr15g0497171 Helianthus annuus HOM05D003142 ORTHO05D003600 1.5e-33 146.7 131 58.0
ATR0681G266 Amborella trichopoda HOM05D003142 ORTHO05D003600 4.5e-33 145.2 130 55.4
CDE11G0511 Ceratophyllum demersum HOM05D003142 ORTHO05D003600 4.5e-33 145.2 130 60.0
SGA_v2.0_scaffold71G23884 Striga asiatica HOM05D003142 ORTHO05D003600 4.5e-33 145.2 189 49.7
Cfa003505 Carpinus fangiana HOM05D000945 ORTHO05D003600 5.9e-33 144.8 131 59.5
Haze_16069 Corylus avellana HOM05D000945 ORTHO05D003600 1.3e-32 143.7 131 58.8
DCAR_016105 Daucus carota HOM05D003142 ORTHO05D003600 1.7e-32 143.3 130 60.0
QL05p003308 Quercus lobata HOM05D003142 ORTHO05D003600 3.8e-32 142.1 163 55.2
CDE05G1488 Ceratophyllum demersum HOM05D003142 ORTHO05D003600 6.5e-32 141.4 126 56.3
Lsat_1_v5_gn_4_91360 Lactuca sativa HOM05D003142 ORTHO05D003600 8.5e-32 141.0 161 50.9
CANSAT56G4392 Cannabis sativa HOM05D003142 ORTHO05D003600 1.4e-31 140.2 134 54.5
CAN.G1743.6 Capsicum annuum HOM05D003142 ORTHO05D003600 2.5e-31 139.4 142 54.9
Sabra03G0041000 Salix brachista HOM05D003142 ORTHO05D003600 3.2e-31 139.0 147 53.7
PGR049G0005 Punica granatum HOM05D003142 ORTHO05D003600 4.2e-31 138.7 130 55.4
PGR119G0325 Punica granatum HOM05D003142 ORTHO05D003600 4.2e-31 138.7 130 55.4
Potri.003G069700 Populus trichocarpa HOM05D003142 ORTHO05D003600 1.0e-29 134.0 153 51.6
MSTRG.10930 Avicennia marina HOM05D003142 ORTHO05D003600 3.0e-29 132.5 134 54.5
Duzib235G1234 Durio zibethinus HOM05D003142 ORTHO05D003600 3.9e-29 132.1 161 49.7
EL10Ac7g16447 Beta vulgaris HOM05D003142 ORTHO05D003600 6.7e-29 131.3 162 51.9
AUR62001440 Chenopodium quinoa HOM05D003142 ORTHO05D003600 1.5e-28 130.2 134 53.0
Thecc.06G125300 Theobroma cacao HOM05D003142 ORTHO05D003600 4.4e-28 128.6 161 50.3
Manes.11G016000 Manihot esculenta HOM05D003142 ORTHO05D003600 5.7e-28 128.3 137 54.7
Psat4g166960 Pisum sativum HOM05D003142 ORTHO05D003600 5.7e-28 128.3 131 56.5
CsaV3_7G034230 Cucumis sativus L. HOM05D003142 ORTHO05D003600 9.7e-28 127.5 132 52.3
Glyma.16G010500 Glycine max HOM05D003142 ORTHO05D003600 2.8e-27 125.9 131 55.0
Peaxi162Scf00207g01552 Petunia axillaris HOM05D003142 ORTHO05D003600 2.8e-27 125.9 184 43.5
MELO3C024332.2 Cucumis melo HOM05D003142 ORTHO05D003600 3.7e-27 125.6 131 50.4
Ah.02g128500 Amaranthus hybridus HOM05D003142 ORTHO05D003600 8.2e-27 124.4 133 51.9
HPP92_026312 Vanilla planifolia HOM05D003142 ORTHO05D003600 1.1e-26 124.0 130 46.9
Lj3g0012768 Lotus japonicus HOM05D003142 ORTHO05D003600 1.4e-26 123.6 130 51.5
TWI23G0931 Tripterygium wilfordii HOM05D003142 ORTHO05D003600 1.8e-26 123.2 172 45.9
Cpa.g.sc25.154 Carica papaya HOM05D003142 ORTHO05D003600 2.4e-26 122.9 156 47.4
Sed0022478 Sechium edule HOM05D003142 ORTHO05D003600 3.1e-26 122.5 132 53.0
Ciclev10025568m.g Citrus clementina HOM05D003142 ORTHO05D003600 1.2e-25 120.6 148 49.3
Atru.chr1.4091 Acer truncatum HOM05D003142 ORTHO05D003600 1.5e-25 120.2 132 52.3
Ca_04807_v3 Cicer arietinum L. HOM05D003142 ORTHO05D003600 1.5e-25 120.2 122 54.9
VMungo0331G1342 Vigna mungo HOM05D003142 ORTHO05D003600 2.6e-25 119.4 131 51.9
TPR.G16663 Trifolium pratense HOM05D003142 ORTHO05D003600 5.9e-25 118.2 160 46.9
AUR62009925 Chenopodium quinoa HOM05D003142 ORTHO05D003600 7.7e-25 117.9 152 47.4
Ciclev10025792m.g Citrus clementina HOM05D003142 ORTHO05D003600 2.2e-24 116.3 160 45.0
arahy.Tifrunner.gnm1.ann1.J5EU5Y Arachis hypogaea HOM05D003142 ORTHO05D003600 2.9e-24 115.9 130 48.5
ClCG09G001160 Citrullus lanatus HOM05D003142 ORTHO05D003600 3.8e-24 115.5 118 53.4
COL.COLO4_30808 Corchorus olitorius HOM05D003142 ORTHO05D003600 3.8e-24 115.5 160 46.9
arahy.Tifrunner.gnm1.ann1.8YD36W Arachis hypogaea HOM05D003142 ORTHO05D003600 5.0e-24 115.2 130 47.7
Gorai.011G062300 Gossypium raimondii HOM05D003142 ORTHO05D003600 5.5e-23 111.7 134 49.3
Gohir.A10G056300 Gossypium hirsutum HOM05D003142 ORTHO05D003600 2.1e-22 109.8 130 46.2
Phvul.010G125800 Phaseolus vulgaris HOM05D003142 ORTHO05D003600 2.7e-22 109.4 122 50.0
ECA232G3972 Erigeron canadensis HOM05D003142 ORTHO05D003600 8.0e-22 107.8 168 40.5
Eucgr.F02474 Eucalyptus grandis HOM05D003142 ORTHO05D003600 1.0e-21 107.5 121 49.6
Sc15g0000640 Simmondsia chinensis HOM05D003142 ORTHO05D003600 2.6e-20 102.8 62 77.4
Lalb_Chr03g0041291 Lupinus albus HOM05D003142 ORTHO05D003600 1.3e-19 100.5 118 50.8
Gohir.D10G058200 Gossypium hirsutum HOM05D003142 ORTHO05D003600 2.2e-19 99.8 164 42.1
Ciclev10027460m.g Citrus clementina HOM05D003142 ORTHO05D003600 1.1e-18 97.4 63 74.6
Medtr8g022240 Medicago truncatula HOM05D003142 ORTHO05D003600 2.4e-18 96.3 61 73.8
Oeu005588.1 Olea europaea HOM05D003142 ORTHO05D003600 4.1e-18 95.5 90 56.7
Ciclev10025604m.g Citrus clementina HOM05D003142 ORTHO05D003600 7.7e-17 91.3 148 42.6
VMungo0540G0607 Vigna mungo HOM05D003142 ORTHO05D036726 8.0e-14 81.3 111 41.4
ATR1133G040 Amborella trichopoda HOM05D003142 ORTHO05D003600 1.0e-13 80.9 104 46.2
GSVIVG01006577001 Vitis vinifera HOM05D003142 ORTHO05D003600 1.0e-13 80.9 66 56.1
Thhalv10004096m.g Eutrema salsugineum HOM05D003142 ORTHO05D003600 5.2e-13 78.6 63 57.1
Carub.0008s2765 Capsella rubella HOM05D003142 ORTHO05D003600 2.0e-12 76.6 63 57.1
Sp2g29820 Schrenkiella parvula HOM05D003142 ORTHO05D003600 2.0e-12 76.6 93 44.1
THA.LOC104827019 Tarenaya hassleriana HOM05D003142 ORTHO05D003600 2.0e-12 76.6 74 51.4
TAR381G1689 Trochodendron aralioides HOM05D003142 ORTHO05D003600 2.0e-12 76.6 92 43.5
AT5G66840 Arabidopsis thaliana HOM05D003142 ORTHO05D003600 2.6e-12 76.3 63 55.6
AL8G44560 Arabidopsis lyrata HOM05D003142 ORTHO05D003600 3.3e-12 75.9 63 54.0
Prupe.7G136600 Prunus persica HOM05D003142 ORTHO05D003600 3.3e-12 75.9 73 46.6
Os10g0391300 Oryza sativa ssp. japonica HOM05D003142 ORTHO05D003600 7.5e-12 74.7 150 34.7
Haze_15430 Corylus avellana HOM05D003142 ORTHO05D003600 1.3e-11 73.9 60 58.3
Aqoxy6G01414 Aquilegia oxysepala HOM05D003142 ORTHO05D003600 1.7e-11 73.6 70 52.9
Cfa003994 Carpinus fangiana HOM05D000591 ORTHO05D000579 1.7e-11 73.6 60 58.3
CARHR280830 Cardamine hirsuta HOM05D003142 ORTHO05D003600 2.2e-11 73.2 163 35.0
Pp3c24_14400 Physcomitrium patens HOM05D003142 ORTHO05D003600 2.8e-11 72.8 126 38.1
Migut.H00456 Erythranthe guttata HOM05D003142 ORTHO05D003600 3.7e-11 72.4 60 53.3
TWI73G1278 Tripterygium wilfordii HOM05D003142 ORTHO05D003600 3.7e-11 72.4 60 56.7
C09p11500 Brassica napus HOM05D003142 ORTHO05D003600 6.3e-11 71.6 64 54.7
CANSAT01G0954 Cannabis sativa HOM05D003142 ORTHO05D003600 8.2e-11 71.2 86 43.0
BcaB04g20095 Brassica carinata HOM05D003142 ORTHO05D003600 1.1e-10 70.9 68 51.5
Medtr5g017820 Medicago truncatula HOM05D003142 ORTHO05D003600 1.1e-10 70.9 70 47.1
Atru.chr3.400 Acer truncatum HOM05D003142 ORTHO05D003600 1.4e-10 70.5 111 38.7
BcaC04g23165 Brassica carinata HOM05D003142 ORTHO05D003600 1.4e-10 70.5 64 54.7
A09p09730 Brassica napus HOM05D003142 ORTHO05D003600 1.4e-10 70.5 64 54.7
BolC9t54039H Brassica oleracea HOM05D003142 ORTHO05D003600 1.4e-10 70.5 64 54.7
BraA09t36620Z Brassica rapa HOM05D003142 ORTHO05D003600 1.4e-10 70.5 64 54.7
RcHm_v2.0_Chr2g0104981 Rosa chinensis HOM05D003142 ORTHO05D003600 1.4e-10 70.5 73 43.8
COL.COLO4_11378 Corchorus olitorius HOM05D000591 ORTHO05D000579 1.8e-10 70.1 66 51.5
Glyma.01G184400 Glycine max HOM05D003142 ORTHO05D003600 1.8e-10 70.1 70 44.3
QL06p042372 Quercus lobata HOM05D003142 ORTHO05D003600 1.8e-10 70.1 68 48.5
Cpa.g.sc6.382 Carica papaya HOM05D003142 ORTHO05D003600 2.4e-10 69.7 60 51.7
FAN23G2712 Fragaria x ananassa HOM05D003142 ORTHO05D003600 2.4e-10 69.7 60 53.3
FAN28G1520 Fragaria x ananassa HOM05D000591 ORTHO05D000579 2.4e-10 69.7 60 53.3
Sed0019220 Sechium edule HOM05D003142 ORTHO05D003600 2.4e-10 69.7 57 54.4
FvH4_1g15670 Fragaria vesca HOM05D003142 ORTHO05D003600 3.1e-10 69.3 60 51.7
PSO675G6917 Papaver somniferum HOM05D003142 ORTHO05D003600 3.1e-10 69.3 66 56.1
arahy.Tifrunner.gnm1.ann1.4YD75G Arachis hypogaea HOM05D003142 ORTHO05D003600 4.1e-10 68.9 71 42.3
arahy.Tifrunner.gnm1.ann1.U4D6S9 Arachis hypogaea HOM05D003142 ORTHO05D003600 4.1e-10 68.9 71 42.3
Thecc.01G052100 Theobroma cacao HOM05D003142 ORTHO05D003600 5.3e-10 68.6 66 50.0
CsaV3_2G017280 Cucumis sativus L. HOM05D003142 ORTHO05D003600 9.1e-10 67.8 57 52.6
Phvul.002G020700 Phaseolus vulgaris HOM05D003142 ORTHO05D003600 9.1e-10 67.8 60 48.3
MD02G1168400 Malus domestica HOM05D003142 ORTHO05D003600 1.2e-09 67.4 66 47.0
Manes.12G101900 Manihot esculenta HOM05D003142 ORTHO05D003600 1.2e-09 67.4 57 56.1
Glyma.11G057900 Glycine max HOM05D003142 ORTHO05D003600 2.0e-09 66.6 69 46.4
Lalb_Chr09g0323011 Lupinus albus HOM05D003142 ORTHO05D003600 2.0e-09 66.6 74 40.5
VMungo1215G1060 Vigna mungo HOM05D003142 ORTHO05D003600 2.0e-09 66.6 70 40.0
Ca_24785_v3 Cicer arietinum L. HOM05D003142 ORTHO05D003600 3.5e-09 65.9 66 45.5
PSO541G2734 Papaver somniferum HOM05D003142 ORTHO05D003600 3.5e-09 65.9 66 54.5
Aa31LG1G15400 Aethionema arabicum HOM05D003142 ORTHO05D003600 4.5e-09 65.5 54 57.4
Lj2g0011618 Lotus japonicus HOM05D003142 ORTHO05D003600 4.5e-09 65.5 68 44.1
Potri.005G136000 Populus trichocarpa HOM05D003142 ORTHO05D003600 4.5e-09 65.5 60 51.7
FAN28G0557 Fragaria x ananassa HOM05D003142 ORTHO05D003600 5.9e-09 65.1 60 50.0
Hma1.2p1_1415F.1_g281980 Hydrangea macrophylla HOM05D003142 ORTHO05D003600 5.9e-09 65.1 57 52.6
DCAR_010908 Daucus carota HOM05D003142 ORTHO05D003600 7.7e-09 64.7 60 53.3
Dinv39877 Davidia involucrata HOM05D003142 ORTHO05D003600 7.7e-09 64.7 57 50.9
Duzib147G1352 Durio zibethinus HOM05D003142 ORTHO05D003600 7.7e-09 64.7 60 53.3
AagrBONN_evm.TU.Sc2ySwM_362.1306 Anthoceros agrestis HOM05D003142 ORTHO05D003600 1.0e-08 64.3 135 33.3
Sabra05G0108800 Salix brachista HOM05D003142 ORTHO05D003600 1.0e-08 64.3 60 51.7
AUR62003852 Chenopodium quinoa HOM05D003142 ORTHO05D003600 1.3e-08 63.9 57 49.1
ClCG02G013230 Citrullus lanatus HOM05D003142 ORTHO05D003600 1.3e-08 63.9 76 39.5
HanXRQChr14g0430661 Helianthus annuus HOM05D003142 ORTHO05D003600 1.3e-08 63.9 95 37.9
AagrBONN_evm.TU.Sc2ySwM_362.1303 Anthoceros agrestis HOM05D003142 ORTHO05D003600 1.7e-08 63.5 68 41.2
Gohir.D12G088700 Gossypium hirsutum HOM05D003142 ORTHO05D003600 1.7e-08 63.5 60 51.7
Gorai.008G074400 Gossypium raimondii HOM05D003142 ORTHO05D003600 1.7e-08 63.5 60 51.7
Lsat_1_v5_gn_4_167040 Lactuca sativa HOM05D003142 ORTHO05D003600 1.7e-08 63.5 57 50.9
vmacro05325 Vaccinium macrocarpon HOM05D003142 ORTHO05D003600 1.7e-08 63.5 58 50.0
AUR62001955 Chenopodium quinoa HOM05D003142 ORTHO05D003600 2.2e-08 63.2 70 41.4
Mapoly0135s0035 Marchantia polymorpha HOM05D003142 ORTHO05D003600 2.9e-08 62.8 164 30.5
Oeu012001.1 Olea europaea HOM05D003142 ORTHO05D003600 2.9e-08 62.8 68 42.6
TPR.G31100 Trifolium pratense HOM05D003142 ORTHO05D003600 2.9e-08 62.8 92 38.0
ECA232G3349 Erigeron canadensis HOM05D003142 ORTHO05D003600 5.0e-08 62.0 58 48.3
Peaxi162Scf00916g00223 Petunia axillaris HOM05D003142 ORTHO05D003600 5.0e-08 62.0 59 47.5
HanXRQChr14g0430641 Helianthus annuus HOM05D003142 ORTHO05D003600 6.5e-08 61.6 55 52.7
CSS0029766 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 8.5e-08 61.2 59 49.2
Nitab4.5_0000310g0210 Nicotiana tabacum HOM05D003142 ORTHO05D003600 8.5e-08 61.2 59 47.5
Nitab4.5_0000440g0180 Nicotiana tabacum HOM05D003142 ORTHO05D003600 8.5e-08 61.2 59 47.5
Sopen02g035190 Solanum pennellii HOM05D003142 ORTHO05D003600 8.5e-08 61.2 77 41.6
Solyc02g090530.4 Solanum lycopersicum HOM05D003142 ORTHO05D003600 1.5e-07 60.5 66 47.0
PSO421G0423 Papaver somniferum HOM05D003142 ORTHO05D305613 1.9e-07 60.1 30 86.7
CAN.G836.63 Capsicum annuum HOM05D003142 ORTHO05D003600 2.5e-07 59.7 57 49.1
AagrBONN_evm.TU.Sc2ySwM_362.1307 Anthoceros agrestis HOM05D003142 ORTHO05D003600 3.2e-07 59.3 128 32.0
PGSC0003DMG400010058 Solanum tuberosum HOM05D003142 ORTHO05D003600 3.2e-07 59.3 55 52.7
HPP92_004082 Vanilla planifolia HOM05D003142 ORTHO05D003600 3.2e-07 59.3 131 30.5
SGA_v2.0_scaffold15G07260 Striga asiatica HOM05D003142 ORTHO05D003600 4.2e-07 58.9 84 36.9
HPP92_004108 Vanilla planifolia HOM05D003142 ORTHO05D003600 4.2e-07 58.9 131 30.5
Gohir.A12G070100 Gossypium hirsutum HOM05D003142 ORTHO05D003600 5.5e-07 58.5 60 48.3
Oeu021839.1 Olea europaea HOM05D003142 ORTHO05D003600 7.2e-07 58.2 57 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1937 Anthoceros agrestis HOM05D003142 ORTHO05D003600 9.4e-07 57.8 52 48.1
Actinidia12061 Actinidia chinensis HOM05D003142 ORTHO05D003600 1.6e-06 57.0 57 45.6
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 6.1e-06 55.1 57 49.1
Zm00001eb109490 Zea mays HOM05D003142 ORTHO05D003600 6.1e-06 55.1 61 45.9
FAN26G1358 Fragaria x ananassa HOM05D003142 ORTHO05D003600 8.0e-06 54.7 50 50.0
Os07g0619700 Oryza sativa ssp. japonica HOM05D003142 ORTHO05D003600 8.0e-06 54.7 75 38.7


User provided reference genes

Program Settings