Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.6e-149 532.7 271 100.0
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 5.8e-147 524.2 272 98.9
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 2.3e-103 379.4 280 68.9
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 3.1e-100 369.0 268 69.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.6e-96 355.5 230 77.0
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.8e-95 353.2 273 67.0
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 5.1e-95 351.7 224 78.1
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.5e-94 350.1 225 76.4
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 4.3e-94 348.6 269 67.3
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 4.3e-94 348.6 211 80.6
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 9.7e-94 347.4 271 65.3
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.3e-93 347.1 232 73.7
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 2.2e-93 346.3 277 64.6
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 2.2e-93 346.3 277 64.3
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 3.7e-93 345.5 211 78.2
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 3.7e-93 345.5 211 78.7
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 8.2e-93 344.4 208 77.9
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 8.2e-93 344.4 223 78.5
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 8.2e-93 344.4 215 78.1
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 8.2e-93 344.4 274 65.0
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.1e-92 344.0 211 78.2
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 2.4e-92 342.8 282 63.5
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 5.3e-92 341.7 276 65.2
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 9.1e-92 340.9 214 76.2
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.6e-91 339.3 212 76.4
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 2.6e-91 339.3 211 78.7
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 2.6e-91 339.3 222 75.2
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 3.4e-91 339.0 229 72.9
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 3.4e-91 339.0 275 63.3
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 3.4e-91 339.0 211 78.2
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 4.5e-91 338.6 222 74.3
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 7.7e-91 337.8 215 76.7
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 1.0e-90 337.4 256 67.6
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.3e-90 337.0 274 63.9
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.3e-90 337.0 211 79.1
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.7e-90 336.7 238 73.1
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 2.2e-90 336.3 261 65.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 2.2e-90 336.3 211 78.7
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 1.1e-89 334.0 221 73.3
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 3.2e-89 332.4 273 63.4
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.2e-89 332.4 211 74.9
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.2e-88 330.5 245 66.9
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.1e-88 329.7 214 75.7
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 3.6e-88 328.9 238 70.2
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 6.1e-88 328.2 298 59.4
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 7.9e-88 327.8 231 70.6
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.0e-87 327.4 211 74.9
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.4e-87 327.0 271 62.7
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 2.3e-87 326.2 205 76.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 3.0e-87 325.9 281 62.3
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 5.1e-87 325.1 211 73.5
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 5.1e-87 325.1 234 68.8
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 6.7e-87 324.7 226 71.7
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 6.7e-87 324.7 210 74.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 8.8e-87 324.3 210 75.7
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 8.8e-87 324.3 211 72.5
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.1e-86 323.9 250 64.8
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.5e-86 323.6 237 67.5
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 3.3e-86 322.4 236 68.6
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 4.4e-86 322.0 211 75.4
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 4.4e-86 322.0 277 61.4
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 4.4e-86 322.0 211 74.9
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 4.4e-86 322.0 211 74.9
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 4.4e-86 322.0 236 68.6
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 7.4e-86 321.2 274 62.4
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 7.4e-86 321.2 243 68.3
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 7.4e-86 321.2 214 72.9
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 9.7e-86 320.9 211 73.0
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 9.7e-86 320.9 210 73.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.7e-85 320.1 214 72.0
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.7e-85 320.1 227 69.6
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.2e-85 319.7 211 74.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.8e-85 319.3 214 73.4
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 3.7e-85 318.9 211 74.4
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 4.8e-85 318.5 214 72.9
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 4.8e-85 318.5 214 72.9
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 4.8e-85 318.5 247 66.4
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.4e-84 317.0 226 69.0
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.8e-84 316.6 248 66.1
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 9.1e-84 314.3 212 72.6
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.2e-83 313.9 205 74.1
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.5e-83 313.5 232 69.4
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.6e-83 312.8 225 68.9
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 2.6e-83 312.8 205 72.7
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 3.4e-83 312.4 208 73.6
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.3e-82 310.5 203 73.9
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 2.9e-82 309.3 270 60.4
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 3.2e-81 305.8 179 80.4
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 3.2e-81 305.8 267 61.0
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 4.2e-81 305.4 221 69.7
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 4.2e-81 305.4 221 69.7
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 4.2e-81 305.4 255 62.0
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 5.5e-81 305.1 210 71.4
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 5.5e-81 305.1 205 71.7
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 5.5e-81 305.1 221 69.7
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 7.2e-81 304.7 270 60.4
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.2e-80 303.9 214 70.1
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 1.6e-80 303.5 215 69.8
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 2.1e-80 303.1 212 70.8
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 2.1e-80 303.1 212 70.8
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 4.7e-80 302.0 269 61.3
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 8.0e-80 301.2 215 69.3
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 3.3e-78 295.8 239 64.0
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 9.7e-78 294.3 182 76.9
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 3.5e-75 285.8 215 63.7
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.9e-74 282.7 255 56.5
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 3.6e-72 275.8 182 71.4
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 4.7e-72 275.4 192 70.3
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.8e-68 263.5 220 59.5
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 1.4e-63 247.3 204 63.2
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 4.8e-61 238.8 179 61.5
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 6.6e-58 228.4 200 53.5
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 2.7e-51 206.5 132 74.2
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.8e-48 196.4 149 65.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.4e-46 189.5 239 45.6
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.2e-44 183.0 114 77.2
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.1e-39 167.9 184 47.8
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.1e-23 114.8 175 36.6
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.7e-21 107.5 78 65.4
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.2e-20 102.8 75 72.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.6e-17 92.4 67 67.2
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 7.6e-14 82.0 177 30.5
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.1e-09 68.2 112 37.5
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 5.6e-09 65.9 233 23.2
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 3.6e-08 63.2 271 24.0
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.1e-07 61.6 233 22.3
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.8e-07 60.8 188 27.7
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 5.3e-07 59.3 152 29.6
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 5.3e-07 59.3 232 21.6
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-06 58.2 178 27.0
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-06 58.2 175 28.6
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-06 58.2 178 27.0
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.2e-06 58.2 166 25.9
Solyc10g054420.2 Solanum lycopersicum HOM05D002933 ORTHO05D009221 1.2e-06 58.2 233 22.3
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.5e-06 57.8 169 27.2
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.5e-06 57.8 175 26.9
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.5e-06 57.8 145 24.8
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 2.0e-06 57.4 180 27.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 2.6e-06 57.0 114 30.7
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 2.6e-06 57.0 114 30.7
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 3.4e-06 56.6 202 23.8
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 3.4e-06 56.6 176 26.1
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 3.4e-06 56.6 220 22.7
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 4.5e-06 56.2 114 30.7
PGSC0003DMG400026667 Solanum tuberosum HOM05D002933 ORTHO05D009221 4.5e-06 56.2 235 22.6
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 9.9e-06 55.1 217 23.0
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 9.9e-06 55.1 182 20.9


User provided reference genes

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