Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.7e-172 609.4 312 100.0
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 3.0e-169 598.6 312 98.1
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.1e-166 590.1 312 96.2
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 3.1e-166 588.6 311 96.1
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 1.7e-135 486.5 312 77.9
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 2.8e-135 485.7 307 78.8
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.8e-135 485.7 305 79.7
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 4.8e-135 485.0 311 77.2
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.1e-134 483.8 311 76.8
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.8e-134 483.0 314 77.4
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 7.0e-134 481.1 311 77.2
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 2.0e-133 479.6 302 77.8
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 4.5e-133 478.4 314 76.1
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 7.7e-133 477.6 316 75.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 7.7e-133 477.6 302 77.5
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 2.2e-132 476.1 313 75.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 6.5e-132 474.6 315 75.6
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 6.5e-132 474.6 312 75.6
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 8.5e-132 474.2 311 76.5
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.1e-131 473.8 312 75.3
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.4e-131 473.4 314 76.4
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.5e-131 472.6 311 75.2
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 3.2e-131 472.2 313 77.3
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 4.2e-131 471.9 314 76.4
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 4.2e-131 471.9 315 75.9
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 5.5e-131 471.5 303 77.2
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 5.5e-131 471.5 311 75.9
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 5.5e-131 471.5 313 75.4
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 1.6e-130 469.9 303 77.9
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.6e-130 469.9 311 74.9
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.0e-129 467.2 311 74.6
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.0e-129 467.2 304 78.0
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.8e-129 466.5 315 74.6
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.8e-129 466.5 314 76.4
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 5.2e-129 464.9 323 73.4
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 5.2e-129 464.9 314 75.2
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 6.7e-129 464.5 317 74.8
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 6.7e-129 464.5 315 73.7
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 6.7e-129 464.5 315 74.3
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.1e-128 463.8 315 74.0
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.1e-128 463.8 312 74.4
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.1e-128 463.8 314 73.9
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 2.0e-128 463.0 319 74.0
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 2.6e-128 462.6 318 72.6
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 3.3e-128 462.2 308 75.0
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.3e-127 460.3 314 74.5
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.7e-127 459.9 295 77.3
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 2.8e-127 459.1 356 66.6
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 3.7e-127 458.8 309 73.8
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 3.7e-127 458.8 316 75.0
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 4.8e-127 458.4 301 78.1
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 6.3e-127 458.0 322 72.7
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.2e-127 457.6 320 73.1
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 2.4e-126 456.1 320 71.9
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 2.4e-126 456.1 309 74.8
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 2.4e-126 456.1 313 74.8
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 2.4e-126 456.1 336 70.2
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 3.1e-126 455.7 325 71.1
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.1e-126 455.3 320 72.8
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 5.3e-126 454.9 312 74.4
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.3e-126 454.9 314 72.9
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 2.0e-125 453.0 296 75.0
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 2.6e-125 452.6 302 75.8
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 3.5e-125 452.2 320 72.8
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 3.5e-125 452.2 320 72.8
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 3.5e-125 452.2 320 72.8
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 5.9e-125 451.4 306 74.5
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.0e-124 450.7 320 72.2
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.7e-124 449.9 305 75.1
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 1.7e-124 449.9 307 73.3
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 2.2e-124 449.5 305 74.8
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.8e-124 448.7 314 72.3
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 5.0e-124 448.4 313 73.2
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 5.0e-124 448.4 315 73.7
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 5.0e-124 448.4 313 73.2
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 5.0e-124 448.4 313 73.2
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 5.0e-124 448.4 315 73.7
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 8.5e-124 447.6 320 71.9
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 8.5e-124 447.6 307 73.0
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 2.5e-123 446.0 309 73.1
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 5.5e-123 444.9 312 73.4
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 2.7e-122 442.6 316 72.5
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.8e-121 439.9 288 74.7
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.2e-120 437.2 313 69.6
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 4.8e-119 431.8 313 69.3
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.1e-118 430.6 330 68.5
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 4.1e-118 428.7 305 70.5
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 9.1e-118 427.6 303 70.3
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 9.1e-118 427.6 303 70.3
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.2e-117 427.2 303 71.0
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 3.5e-117 425.6 303 70.3
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.5e-117 425.2 310 72.3
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.0e-116 424.1 303 70.3
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 2.9e-116 422.5 258 81.0
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 6.5e-116 421.4 279 74.9
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 8.5e-116 421.0 279 74.9
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 3.2e-115 419.1 308 69.2
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 7.2e-115 417.9 312 70.5
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 1.0e-113 414.1 300 70.7
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 1.8e-113 413.3 318 66.4
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 3.0e-113 412.5 323 65.3
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.2e-113 411.8 318 66.0
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 4.4e-112 408.7 323 65.3
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.3e-111 404.8 323 64.7
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.3e-111 404.8 323 64.7
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.4e-110 403.7 252 77.8
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.0e-105 385.6 306 65.0
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.6e-101 373.6 310 63.9
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 2.7e-101 372.9 278 65.5
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 2.7e-101 372.9 305 61.0
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 7.8e-101 371.3 255 73.3
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.3e-100 370.5 314 62.4
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 3.6e-98 362.5 302 58.9
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.1e-97 359.4 231 77.1
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 3.4e-96 355.9 277 63.9
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 7.5e-96 354.8 284 60.9
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 8.3e-95 351.3 308 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 2.7e-93 346.3 302 57.6
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 2.7e-93 346.3 231 74.5
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.7e-92 343.6 225 76.4
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.3e-91 338.2 285 64.2
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.0e-89 332.4 280 66.1
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.0e-89 332.4 218 73.4
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 7.8e-85 318.2 246 62.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 8.6e-76 288.1 300 49.0
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 8.9e-73 278.1 282 50.0
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.9e-71 273.1 244 61.9
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.5e-67 260.0 149 83.2
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.4e-62 243.4 160 76.2
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 3.2e-62 243.0 312 45.8
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 9.0e-49 198.4 229 43.2
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.3e-44 184.5 159 60.4
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 6.2e-42 175.6 368 33.4
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.4e-41 174.5 112 74.1
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 3.1e-41 173.3 290 35.9
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 6.3e-34 149.1 193 48.2
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.8e-33 147.5 94 74.5
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.3e-33 146.0 94 73.4
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.3e-33 146.0 94 73.4
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 4.2e-30 136.3 114 65.8
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.2e-29 134.8 95 73.7
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 3.0e-28 130.2 112 59.8
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.1e-28 129.4 101 67.3
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 7.4e-19 99.0 53 90.6
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.0e-17 92.4 64 71.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.5e-14 82.8 94 52.1
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-11 75.1 53 67.9
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.3e-11 73.6 47 74.5
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.3e-11 73.6 47 74.5
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.4e-11 73.2 67 59.7
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.1e-09 68.6 45 71.1
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.0e-09 65.9 85 44.7


User provided reference genes

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