Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G1085 Papaver somniferum HOM05D001502 ORTHO05D304376 6.8e-145 517.3 260 100.0
PSO732G0359 Papaver somniferum HOM05D001502 ORTHO05D002950 1.4e-28 131.0 183 42.6
PSO675G1241 Papaver somniferum HOM05D001502 ORTHO05D002950 1.2e-27 127.9 232 36.6
PSO675G2714 Papaver somniferum HOM05D001502 ORTHO05D002950 1.5e-27 127.5 232 36.6
PSO729G0025 Papaver somniferum HOM05D001502 ORTHO05D002950 5.7e-27 125.6 233 36.1
PSO724G0222 Papaver somniferum HOM05D001502 ORTHO05D002950 6.3e-26 122.1 232 35.8
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 3.9e-15 86.3 169 33.7
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 6.6e-15 85.5 168 36.9
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 8.6e-15 85.1 122 42.6
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 1.1e-14 84.7 127 40.2
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 3.3e-14 83.2 125 38.4
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 3.3e-14 83.2 172 35.5
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 4.3e-14 82.8 127 39.4
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 4.3e-14 82.8 125 38.4
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 7.3e-14 82.0 122 41.0
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 9.5e-14 81.6 122 41.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.2e-13 81.3 122 41.0
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 1.2e-13 81.3 122 40.2
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 1.6e-13 80.9 122 41.0
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.1e-13 80.5 175 34.3
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.1e-13 80.5 175 34.3
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 2.1e-13 80.5 175 34.3
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 2.1e-13 80.5 127 40.2
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 3.6e-13 79.7 122 41.0
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 4.7e-13 79.3 125 39.2
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 4.7e-13 79.3 122 38.5
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 4.7e-13 79.3 189 33.9
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 6.2e-13 79.0 134 36.6
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 6.2e-13 79.0 124 41.1
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 6.2e-13 79.0 124 41.1
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 6.2e-13 79.0 123 38.2
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 6.2e-13 79.0 122 40.2
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 8.0e-13 78.6 122 39.3
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 8.0e-13 78.6 122 41.0
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 8.0e-13 78.6 130 36.9
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 1.1e-12 78.2 109 40.4
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 1.1e-12 78.2 127 38.6
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 1.4e-12 77.8 124 37.9
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 1.4e-12 77.8 167 31.1
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 1.8e-12 77.4 187 33.7
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.8e-12 77.4 122 40.2
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 1.8e-12 77.4 127 38.6
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 1.8e-12 77.4 122 38.5
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.3e-12 77.0 122 37.7
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.3e-12 77.0 167 32.9
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 2.3e-12 77.0 122 41.0
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 2.3e-12 77.0 129 38.8
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 2.3e-12 77.0 122 39.3
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 3.1e-12 76.6 122 37.7
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 3.1e-12 76.6 124 40.3
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.1e-12 76.6 122 41.0
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 3.1e-12 76.6 125 36.8
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 3.1e-12 76.6 127 36.2
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 3.1e-12 76.6 125 38.4
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 4.0e-12 76.3 167 31.7
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 4.0e-12 76.3 189 32.3
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.2e-12 75.9 124 37.1
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.2e-12 75.9 124 37.1
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.2e-12 75.9 124 37.1
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.2e-12 75.9 124 37.1
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 5.2e-12 75.9 185 29.2
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 5.2e-12 75.9 122 40.2
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 5.2e-12 75.9 137 34.3
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 6.8e-12 75.5 156 35.3
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 6.8e-12 75.5 122 38.5
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 8.9e-12 75.1 167 31.1
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 8.9e-12 75.1 123 36.6
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 8.9e-12 75.1 199 29.1
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 8.9e-12 75.1 122 39.3
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 8.9e-12 75.1 127 36.2
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 1.2e-11 74.7 127 34.6
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 1.2e-11 74.7 127 36.2
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 1.2e-11 74.7 127 34.6
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 1.2e-11 74.7 122 39.3
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 1.2e-11 74.7 125 37.6
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 1.2e-11 74.7 167 31.7
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 1.5e-11 74.3 136 38.2
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 2.0e-11 73.9 141 34.0
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 2.0e-11 73.9 125 38.4
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 2.0e-11 73.9 127 36.2
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 2.0e-11 73.9 127 36.2
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 2.0e-11 73.9 167 31.7
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 2.6e-11 73.6 129 38.0
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 2.6e-11 73.6 127 35.4
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 2.6e-11 73.6 125 38.4
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 2.6e-11 73.6 127 36.2
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 3.4e-11 73.2 129 36.4
AagrBONN_evm.TU.Sc2ySwM_344.901 Anthoceros agrestis HOM05D001502 ORTHO05D002950 4.4e-11 72.8 141 36.2
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 5.8e-11 72.4 127 36.2
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 5.8e-11 72.4 122 39.3
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 5.8e-11 72.4 122 36.9
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 7.5e-11 72.0 127 35.4
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 7.5e-11 72.0 122 36.9
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 7.5e-11 72.0 127 33.9
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 9.8e-11 71.6 127 37.0
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 9.8e-11 71.6 122 36.9
Pp3c1_20810 Physcomitrium patens HOM05D001502 ORTHO05D002950 1.3e-10 71.2 129 36.4
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 1.3e-10 71.2 186 32.3
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.3e-10 71.2 122 36.9
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 1.3e-10 71.2 122 37.7
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 2.2e-10 70.5 108 38.9
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 2.2e-10 70.5 127 35.4
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 2.2e-10 70.5 143 33.6
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 2.2e-10 70.5 125 34.4
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.9e-10 70.1 135 36.3
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 2.9e-10 70.1 112 37.5
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 2.9e-10 70.1 123 36.6
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 3.7e-10 69.7 110 40.0
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 3.7e-10 69.7 122 35.2
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 3.7e-10 69.7 111 39.6
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 4.9e-10 69.3 122 35.2
Pp3c14_3750 Physcomitrium patens HOM05D001502 ORTHO05D002950 6.4e-10 68.9 123 35.8
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 8.3e-10 68.6 122 34.4
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 8.3e-10 68.6 126 34.9
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 8.3e-10 68.6 127 35.4
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 1.1e-09 68.2 122 36.1
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.1e-09 68.2 135 35.6
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.1e-09 68.2 127 34.6
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 1.1e-09 68.2 134 31.3
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 1.4e-09 67.8 122 34.4
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 1.4e-09 67.8 108 38.0
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 1.4e-09 67.8 108 38.0
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.4e-09 67.8 135 34.8
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 1.9e-09 67.4 108 38.0
CAN.G774.29 Capsicum annuum HOM05D001502 ORTHO05D002950 2.4e-09 67.0 232 27.6
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 2.4e-09 67.0 125 33.6
BraA09t38328Z Brassica rapa HOM05D001502 ORTHO05D002950 3.2e-09 66.6 122 34.4
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 3.2e-09 66.6 161 31.1
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 4.1e-09 66.2 147 33.3
Actinidia27382 Actinidia chinensis HOM05D001502 ORTHO05D002950 5.4e-09 65.9 103 38.8
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 7.0e-09 65.5 101 38.6
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 1.2e-08 64.7 146 31.5
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 2.1e-08 63.9 122 34.4
BcaC04g21150 Brassica carinata HOM05D001502 ORTHO05D002950 2.1e-08 63.9 122 33.6
BolC9t56342H Brassica oleracea HOM05D001502 ORTHO05D002950 2.1e-08 63.9 122 33.6
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 2.1e-08 63.9 122 32.0
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 2.7e-08 63.5 176 29.5
BcaB01g01516 Brassica carinata HOM05D001502 ORTHO05D002950 3.5e-08 63.2 159 30.2
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 3.5e-08 63.2 122 35.2
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 3.5e-08 63.2 122 36.9
BcaB01g01656 Brassica carinata HOM05D001502 ORTHO05D002950 4.6e-08 62.8 108 35.2
A03p29400 Brassica napus HOM05D001502 ORTHO05D002950 4.6e-08 62.8 103 36.9
C03p35530 Brassica napus HOM05D001502 ORTHO05D002950 4.6e-08 62.8 103 36.9
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 1.3e-07 61.2 122 32.0
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 3.0e-07 60.1 112 35.7
CBR_g52340 Chara braunii HOM05D001502 ORTHO05D002950 3.0e-07 60.1 128 31.2
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 8.6e-07 58.5 138 31.9
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.1e-06 58.2 75 49.3
SEGI_08344 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 1.1e-06 58.2 97 39.2
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 5.6e-06 55.8 166 31.3


User provided reference genes

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