Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 5.9e-152 540.8 267 100.0
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 7.0e-105 384.4 206 93.7
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 9.2e-105 384.0 206 93.7
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.0e-104 382.9 206 93.7
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 5.6e-78 295.0 207 73.4
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 7.3e-78 294.7 204 72.5
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 6.2e-77 291.6 206 71.4
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.9e-76 288.1 204 71.6
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.5e-75 287.0 213 67.1
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.5e-75 287.0 204 72.1
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.4e-75 285.8 206 67.5
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.4e-75 285.4 202 68.3
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 7.6e-75 284.6 204 71.1
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 7.6e-75 284.6 196 71.4
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.3e-74 283.9 192 74.0
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.7e-74 283.5 206 70.4
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 2.2e-74 283.1 196 70.4
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.9e-74 282.0 204 69.6
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 4.9e-74 282.0 208 67.3
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 8.4e-74 281.2 195 71.3
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.1e-73 280.8 204 67.6
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.1e-73 280.8 204 67.6
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.9e-73 280.0 191 70.7
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.9e-73 280.0 205 69.3
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.9e-73 280.0 198 70.7
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 2.4e-73 279.6 196 69.9
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 5.4e-73 278.5 206 68.0
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 5.4e-73 278.5 204 68.1
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 5.4e-73 278.5 204 68.1
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 9.3e-73 277.7 205 70.7
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 1.2e-72 277.3 192 71.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.6e-72 276.9 206 68.9
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.1e-72 276.6 225 62.2
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 2.7e-72 276.2 211 65.9
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 4.6e-72 275.4 202 66.3
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 6.0e-72 275.0 206 69.9
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 6.0e-72 275.0 204 67.6
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 7.9e-72 274.6 209 67.0
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 7.9e-72 274.6 192 70.3
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 7.9e-72 274.6 224 62.9
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.0e-71 274.2 192 70.8
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 2.3e-71 273.1 193 69.4
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 3.0e-71 272.7 204 68.6
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 3.0e-71 272.7 195 70.3
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 3.9e-71 272.3 211 67.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 3.9e-71 272.3 204 66.7
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 3.9e-71 272.3 194 69.6
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.9e-71 272.3 195 69.7
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 5.1e-71 271.9 204 68.1
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.9e-70 270.0 206 66.5
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 1.9e-70 270.0 226 64.2
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.5e-70 269.6 193 68.9
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.3e-70 268.9 206 68.0
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 4.3e-70 268.9 226 63.3
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 4.3e-70 268.9 193 68.4
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 5.6e-70 268.5 201 69.7
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 7.3e-70 268.1 195 69.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 7.3e-70 268.1 208 67.8
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 9.6e-70 267.7 225 60.4
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 9.6e-70 267.7 204 65.2
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.6e-69 266.9 185 74.1
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.8e-69 266.2 205 64.9
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.8e-69 266.2 189 68.8
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 3.6e-69 265.8 227 59.5
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 4.8e-69 265.4 189 70.4
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 4.8e-69 265.4 202 63.9
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 6.2e-69 265.0 224 58.9
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 6.2e-69 265.0 206 65.5
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 1.8e-68 263.5 208 63.9
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.4e-68 263.1 251 55.8
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 2.4e-68 263.1 202 63.4
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 5.3e-68 261.9 203 65.0
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 5.3e-68 261.9 226 58.8
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 6.9e-68 261.5 204 64.7
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 9.0e-68 261.2 205 62.4
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 9.0e-68 261.2 193 66.3
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.6e-67 259.6 185 70.8
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 3.4e-67 259.2 238 57.6
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 4.5e-67 258.8 205 63.9
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 9.9e-67 257.7 198 63.6
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 9.9e-67 257.7 226 57.1
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 9.9e-67 257.7 226 57.1
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.3e-66 257.3 230 58.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.7e-66 256.9 206 64.1
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.9e-66 256.1 205 62.0
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 3.8e-66 255.8 180 70.0
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 6.4e-66 255.0 226 57.1
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 6.4e-66 255.0 221 62.0
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 8.4e-66 254.6 226 56.6
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.4e-65 253.8 186 67.7
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.4e-65 253.8 226 56.6
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.4e-65 253.8 226 56.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 3.2e-65 252.7 226 57.1
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 7.1e-65 251.5 187 68.4
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 7.1e-65 251.5 179 70.4
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 9.3e-65 251.1 226 56.6
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 1.2e-64 250.8 206 65.0
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.6e-64 250.4 226 56.6
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.1e-64 250.0 186 65.6
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.1e-64 250.0 201 64.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.1e-64 250.0 203 63.1
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 2.7e-64 249.6 226 56.2
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.7e-64 249.6 199 62.3
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.6e-64 248.8 185 68.1
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.0e-63 247.7 205 59.0
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.0e-63 246.1 173 70.5
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 8.7e-63 244.6 207 60.9
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.1e-62 244.2 171 70.8
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 3.3e-62 242.7 236 57.6
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 5.6e-62 241.9 225 55.1
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 4.0e-60 235.7 185 67.0
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 4.0e-60 235.7 207 62.8
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 4.0e-60 235.7 227 58.6
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 5.3e-60 235.3 173 68.8
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.5e-59 232.3 176 67.6
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 1.3e-58 230.7 195 58.5
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 4.6e-56 222.2 146 71.9
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 7.9e-56 221.5 199 59.8
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.9e-56 221.5 264 50.8
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.9e-56 221.5 264 50.8
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 3.9e-55 219.2 225 49.8
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 9.6e-54 214.5 174 64.9
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.3e-53 214.2 145 73.1
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 6.3e-53 211.8 145 70.3
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-48 197.6 142 65.5
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 2.5e-46 189.9 183 55.2
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 7.7e-43 178.3 213 45.1
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.0e-42 177.9 187 49.2
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.0e-42 177.9 198 46.5
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.7e-42 177.2 145 64.1
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 2.9e-42 176.4 140 66.4
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 2.5e-41 173.3 150 58.7
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 1.2e-40 171.0 124 70.2
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.8e-39 167.2 140 57.1
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.8e-39 167.2 122 67.2
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 3.9e-39 166.0 106 74.5
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 4.5e-35 152.5 114 70.2
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.2e-34 150.2 206 42.2
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.4e-33 147.5 248 37.1
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 7.4e-30 135.2 148 43.2
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 4.8e-29 132.5 180 37.8
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 2.0e-27 127.1 141 43.3
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.2e-25 119.4 158 44.9
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.5e-22 110.9 77 63.6
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 2.0e-22 110.5 222 36.0
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 3.7e-21 106.3 75 64.0
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.3e-18 97.8 142 38.7
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 4.2e-17 92.8 79 57.0
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 4.7e-16 89.4 73 61.6
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 8.0e-16 88.6 79 54.4
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 8.8e-15 85.1 69 55.1
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 8.8e-15 85.1 49 77.6
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 7.5e-14 82.0 48 77.1
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 2.2e-13 80.5 55 63.6
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 3.1e-12 76.6 69 59.4
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 3.2e-09 66.6 44 70.5
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 9.4e-09 65.1 56 57.1
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 9.4e-09 65.1 33 87.9
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 1.6e-08 64.3 33 87.9
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.1e-08 63.9 41 70.7
PSO063G7338 Papaver somniferum HOM05D004585 ORTHO05D302184 3.0e-07 60.1 127 37.8
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 2.0e-06 57.4 77 44.2


User provided reference genes

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