Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 7.3e-223 776.9 398 100.0
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 1.1e-191 673.3 397 85.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 3.3e-167 592.0 399 75.9
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.8e-104 381.7 443 51.0
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.1e-101 374.4 396 51.8
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.0e-99 367.9 418 50.0
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.3e-98 362.8 382 51.6
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 8.9e-96 354.8 450 47.1
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 4.4e-95 352.4 411 48.9
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 7.5e-95 351.7 234 76.5
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.7e-94 350.5 390 49.7
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 2.2e-94 350.1 424 48.8
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.2e-94 350.1 424 49.1
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.4e-93 347.4 421 48.9
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 5.4e-93 345.5 398 50.3
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 7.1e-93 345.1 400 49.8
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 9.2e-93 344.7 422 46.9
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.2e-92 344.4 417 48.0
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 2.7e-92 343.2 410 44.6
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 7.8e-92 341.7 422 46.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.0e-91 341.3 419 46.1
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.0e-91 341.3 402 48.0
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.7e-91 340.5 398 47.0
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 3.0e-91 339.7 423 46.3
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 3.0e-91 339.7 404 47.8
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.1e-91 339.0 380 49.7
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 6.6e-91 338.6 380 50.3
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 6.6e-91 338.6 404 47.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.5e-90 337.4 421 46.8
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.5e-90 337.4 404 47.0
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 4.3e-90 335.9 391 47.8
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 5.6e-90 335.5 419 47.5
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 5.6e-90 335.5 438 47.3
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 7.3e-90 335.1 425 46.8
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 7.3e-90 335.1 422 43.6
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.2e-89 334.3 390 47.9
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.2e-89 334.3 380 49.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.8e-89 333.2 389 47.0
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 2.8e-89 333.2 385 49.1
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.6e-89 332.8 404 46.8
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.2e-89 332.0 462 43.5
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 8.1e-89 331.6 394 46.2
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.4e-88 330.9 402 46.5
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.8e-88 330.5 391 46.8
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 4.0e-88 329.3 386 49.0
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 4.0e-88 329.3 371 48.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 5.2e-88 328.9 453 44.2
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 6.8e-88 328.6 421 44.7
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.9e-88 328.2 404 46.5
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.2e-87 327.8 405 46.7
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.2e-87 327.8 385 48.3
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.0e-87 327.0 380 47.1
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 2.0e-87 327.0 421 43.2
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 5.8e-87 325.5 371 50.4
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 7.6e-87 325.1 404 46.0
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 7.6e-87 325.1 389 48.1
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 7.6e-87 325.1 401 46.1
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.3e-86 324.3 381 46.7
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.3e-86 324.3 381 46.7
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.2e-86 323.6 397 45.8
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.9e-86 323.2 402 45.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.9e-86 323.2 402 45.8
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.7e-86 322.8 421 42.8
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 6.4e-86 322.0 435 45.3
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.9e-85 320.5 383 47.3
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 5.4e-85 318.9 407 45.5
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.2e-84 317.8 417 43.2
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-84 317.4 383 46.7
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.6e-84 317.4 391 48.3
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.7e-84 316.6 407 45.0
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.7e-84 316.6 366 49.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 4.6e-84 315.8 380 46.3
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 7.8e-84 315.1 383 46.7
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.0e-83 314.7 406 46.3
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.3e-83 314.3 384 45.8
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 1.3e-83 314.3 399 45.4
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.3e-83 313.5 402 42.8
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 3.0e-83 313.2 417 42.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.9e-83 312.8 308 54.2
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 5.1e-83 312.4 380 47.1
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.1e-82 311.2 434 43.8
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-82 310.8 272 57.4
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.9e-82 310.5 428 43.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 5.6e-82 308.9 331 50.8
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 7.3e-82 308.5 404 42.8
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 9.6e-82 308.1 436 43.8
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.6e-81 307.4 510 39.2
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 2.1e-81 307.0 415 43.6
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.7e-81 305.8 285 55.4
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 8.1e-81 305.1 431 44.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.1e-80 304.7 295 53.6
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.1e-80 304.7 389 45.2
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.2e-79 301.2 346 46.2
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 9.9e-79 298.1 318 48.4
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.3e-78 297.7 400 43.5
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.8e-78 296.2 367 43.9
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 2.4e-77 293.5 246 58.9
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.4e-77 293.5 435 42.8
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 4.2e-77 292.7 361 44.0
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 2.1e-76 290.4 405 44.0
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.7e-76 290.0 422 43.1
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 7.8e-76 288.5 343 46.4
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.3e-75 287.7 431 42.5
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 7.3e-74 282.0 247 57.5
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.6e-73 280.8 247 57.9
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.1e-73 280.4 247 57.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.1e-72 278.1 239 58.2
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.1e-72 278.1 239 58.2
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 7.6e-71 271.9 370 42.4
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.2e-70 270.4 425 40.5
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 7.1e-69 265.4 310 47.4
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 7.9e-68 261.9 301 48.5
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.2e-63 248.1 406 38.4
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.7e-62 244.2 287 46.7
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.3e-59 233.8 287 43.9
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 2.1e-57 227.3 278 45.0
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.0e-54 218.4 321 41.7
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 8.4e-54 215.3 288 48.3
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 2.5e-50 203.8 303 38.0
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.3e-49 201.4 286 42.0
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.3e-49 201.4 249 48.2
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.0e-46 191.8 282 39.7
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 3.8e-46 189.9 169 59.2
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 3.2e-45 186.8 188 53.7
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 6.7e-43 179.1 321 38.0
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.1e-42 178.3 235 45.5
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.5e-42 177.2 277 40.4
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 3.4e-39 166.8 304 33.6
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 7.7e-39 165.6 147 58.5
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 3.2e-37 160.2 257 36.2
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 8.8e-35 152.1 179 48.0
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.7e-34 148.7 123 58.5
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 6.9e-32 142.5 156 49.4
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.7e-31 139.0 106 56.6
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.0e-27 128.6 216 36.1
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.8e-27 127.9 216 36.1
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.0e-27 127.1 100 59.0
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.4e-26 122.5 102 59.8
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 3.1e-24 117.1 69 69.6
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 3.8e-22 110.2 98 57.1
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.8e-19 101.3 78 59.0
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 2.3e-19 100.9 69 65.2
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.2e-19 99.8 62 71.0
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 3.3e-18 97.1 278 28.8
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.7e-17 94.7 174 35.1
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-16 92.0 59 67.8
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.4e-16 91.7 118 48.3
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 7.0e-16 89.4 216 35.2
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.0e-15 87.8 176 34.7
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.5e-13 81.6 57 61.4
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.1e-12 77.8 113 41.6
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 4.0e-11 73.6 93 48.4
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.7e-10 69.7 44 63.6
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.2e-09 67.8 50 66.0
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.8e-09 66.6 50 64.0
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.7e-07 60.8 51 56.9
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.5e-06 55.8 46 60.9


User provided reference genes

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