Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 3637.8 1879 100.0
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 3573.9 1885 98.1
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2795.8 1888 76.6
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2763.4 1891 74.7
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2664.4 1892 72.8
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2660.9 1890 72.5
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2637.1 1890 72.1
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2590.1 1887 70.6
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2583.5 1890 71.0
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2577.4 1890 70.5
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2566.2 1891 70.3
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2563.9 1893 70.0
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2560.0 1905 70.8
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2552.7 1915 69.1
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2536.9 1889 69.1
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2521.5 1890 68.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2518.4 1881 69.6
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2511.9 1891 68.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2508.4 1895 68.7
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2508.0 1891 68.4
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2507.2 1890 68.6
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2506.5 1891 68.7
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2498.0 1948 67.1
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2493.4 1891 68.4
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2491.1 1892 68.7
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2483.0 1893 68.6
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2478.4 1924 68.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2472.2 1889 67.5
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2466.8 1892 67.6
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2464.5 1891 67.3
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2460.6 1903 67.8
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2457.2 1897 67.7
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2456.8 1906 66.9
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2456.0 1894 67.9
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2456.0 1891 67.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2455.2 1891 67.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2449.1 1896 67.1
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2443.7 1889 67.0
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2442.2 1893 66.9
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2441.4 1896 67.4
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2441.0 1887 67.0
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2439.5 1887 67.1
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2428.7 1890 65.4
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2425.6 1888 67.7
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2424.4 1897 66.6
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2421.0 1893 66.6
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2417.5 2023 64.3
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2406.3 1891 66.4
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2390.9 1889 64.8
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2357.0 1908 65.0
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2355.5 1903 65.2
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2354.3 1716 71.0
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2350.9 1890 64.8
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2349.7 1957 63.7
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2333.9 1955 63.4
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2322.0 1891 64.1
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2293.8 1887 63.1
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2293.1 1888 63.3
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2292.7 1888 63.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2289.2 1887 63.4
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2287.3 1897 64.2
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2283.8 1891 63.9
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2281.1 1886 63.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2266.5 2020 59.5
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2257.6 2322 55.1
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2246.1 1640 70.2
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2232.6 1923 61.2
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2231.8 1890 62.2
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2228.8 1891 62.3
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2223.7 1887 61.5
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2214.9 1891 61.4
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2211.0 1927 61.7
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2204.5 1891 61.2
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2199.9 1892 61.2
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2171.0 1889 59.9
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2161.7 1590 69.4
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2029.2 1512 69.9
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2013.0 1477 69.3
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1978.0 1585 64.5
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1805.8 1461 65.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1786.5 1431 65.4
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1745.7 1919 49.2
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1712.2 1907 48.6
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1710.3 1918 48.6
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1660.2 1444 60.2
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1630.5 1188 70.1
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1628.2 1428 60.7
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1585.5 1923 45.6
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1516.9 1878 49.0
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1399.8 1243 59.5
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1394.4 1220 60.3
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1332.4 1951 40.7
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1283.5 1122 61.9
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1193.7 962 65.5
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1167.1 840 69.9
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1118.6 1246 51.1
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.2e-306 1056.6 780 69.5
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-288 997.3 1626 41.4
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-262 910.6 1625 39.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.1e-257 894.8 762 60.6
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 5.4e-252 875.9 783 57.6
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 4.8e-232 809.7 694 61.8
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 2.8e-224 783.9 692 60.8
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 9.4e-212 742.3 1005 45.9
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.4e-207 728.4 1058 40.3
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.6e-206 724.2 699 54.5
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 6.7e-202 709.5 1066 41.0
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.1e-201 708.8 605 61.0
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-187 662.1 520 66.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 5.0e-165 587.0 796 45.0
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.1e-154 552.7 518 58.7
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.4e-127 462.6 399 59.6
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.9e-111 409.1 408 57.4
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 7.4e-108 397.1 413 55.4
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 1.6e-99 369.4 299 64.5
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.6e-97 362.1 313 64.9
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 9.7e-92 343.6 230 75.7
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 9.7e-92 343.6 367 53.7
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 2.0e-89 335.9 328 57.9
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.8e-88 331.6 356 51.1
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 7.9e-86 323.9 329 57.4
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 2.8e-83 315.5 228 72.8
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 4.8e-83 314.7 277 59.6
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 5.3e-82 311.2 319 55.8
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 5.9e-81 307.8 301 56.1
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 5.2e-77 294.7 265 61.1
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 3.5e-57 228.8 176 67.6
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.0e-54 217.6 181 62.4
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.4e-53 216.9 298 46.6
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.2e-52 213.8 179 63.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-51 209.5 217 52.5
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-51 209.5 217 52.5
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 4.9e-51 208.4 332 43.1
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 8.3e-51 207.6 1751 22.5
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 2.7e-49 202.6 379 36.4
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 3.5e-49 202.2 216 55.1
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 4.3e-47 195.3 217 53.0
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 5.0e-40 171.8 400 34.0
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 6.6e-40 171.4 168 57.1
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.6e-38 166.8 1067 21.9
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 3.1e-37 162.5 126 67.5
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.3e-35 157.1 121 67.8
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.2e-34 152.5 173 52.6
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 7.1e-34 151.4 149 58.4
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 3.9e-32 145.6 301 32.9
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.6e-32 144.8 122 55.7
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.5e-28 133.7 82 76.8
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.5e-28 133.7 98 66.3
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 3.4e-28 132.5 135 54.1
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.9e-27 129.4 214 38.8
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 4.9e-27 128.6 75 84.0
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 2.4e-26 126.3 118 56.8
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.6e-24 118.2 127 46.5
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.5e-23 117.1 77 71.4
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 7.3e-23 114.8 985 22.1
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 6.9e-21 108.2 147 45.6
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 1.9e-18 100.1 81 71.6
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 4.6e-17 95.5 106 52.8
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 7.8e-17 94.7 99 53.5
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 1.0e-16 94.4 99 53.5
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-15 89.0 57 78.9
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 2.1e-14 86.7 74 68.9
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.8e-14 85.5 56 71.4
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 2.2e-11 76.6 61 68.9
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.9e-11 76.3 80 48.8
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 3.8e-11 75.9 46 80.4
SEGI_02226 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.3e-10 71.2 111 40.5
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.2e-09 70.9 64 48.4
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 1.6e-09 70.5 91 47.3
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 3.5e-09 69.3 42 73.8
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 7.9e-09 68.2 37 83.8
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.5e-07 63.2 73 43.8
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 9.6e-07 61.2 66 53.0
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 1.3e-06 60.8 52 63.5
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 1.6e-06 60.5 49 63.3
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 2.8e-06 59.7 33 81.8
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 4.8e-06 58.9 54 50.0
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.1e-06 58.2 43 58.1


User provided reference genes

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