Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 2.2e-168 595.9 387 100.0
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.7e-155 553.1 392 92.9
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 4.7e-110 402.1 397 65.5
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 4.9e-107 392.1 390 74.1
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.6e-105 387.1 404 72.8
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.0e-104 384.4 401 65.6
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 7.3e-103 378.3 393 67.9
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.2e-102 377.5 388 71.6
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 3.6e-102 375.9 395 71.6
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 3.4e-100 369.4 393 68.2
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 4.4e-100 369.0 393 65.6
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.3e-99 367.5 402 69.9
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 3.8e-99 365.9 392 67.3
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 4.9e-99 365.5 395 71.4
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.1e-98 364.4 394 70.8
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-98 364.4 392 62.8
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.9e-98 363.6 393 69.2
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.2e-97 360.9 389 60.9
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.1e-97 360.1 397 67.0
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 1.0e-96 357.8 392 68.4
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.7e-96 357.1 395 64.6
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.7e-96 357.1 394 66.2
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.7e-96 357.1 392 68.4
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.3e-96 356.7 404 63.6
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.0e-96 356.3 400 64.0
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.9e-95 353.6 389 64.8
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 3.3e-95 352.8 397 68.5
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 3.3e-95 352.8 395 53.9
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 3.3e-95 352.8 204 85.8
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 4.3e-95 352.4 389 67.4
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 7.3e-95 351.7 392 69.6
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 7.3e-95 351.7 391 62.7
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 9.6e-95 351.3 396 59.1
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.2e-94 350.9 395 55.7
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.2e-94 350.9 392 66.8
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.2e-94 350.9 410 63.9
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.6e-94 350.5 389 66.3
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.1e-94 350.1 210 84.8
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 2.8e-94 349.7 389 64.0
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 2.8e-94 349.7 397 68.0
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 3.6e-94 349.4 390 56.2
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 3.6e-94 349.4 399 61.4
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 8.1e-94 348.2 407 61.9
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 4.4e-92 342.4 391 68.0
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 7.6e-92 341.7 176 89.8
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 9.9e-92 341.3 400 65.5
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.3e-91 340.9 392 66.1
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.7e-91 340.5 366 66.4
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.7e-91 340.5 393 67.4
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.9e-91 339.7 391 65.2
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 2.9e-91 339.7 392 69.6
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.9e-91 339.7 394 66.8
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.9e-91 339.0 382 67.5
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 4.9e-91 339.0 478 60.0
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.4e-91 338.6 391 63.4
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 6.4e-91 338.6 390 70.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 8.4e-91 338.2 399 66.4
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 1.4e-90 337.4 215 80.5
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.9e-90 337.0 426 60.6
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.4e-90 336.7 378 66.4
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 4.2e-90 335.9 389 55.0
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 4.2e-90 335.9 393 66.7
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.1e-90 335.1 377 66.6
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.2e-89 334.3 394 67.3
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 6.0e-89 332.0 388 69.1
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.0e-88 331.3 180 88.3
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 1.3e-88 330.9 393 56.5
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.3e-88 330.9 391 49.6
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.3e-88 330.9 440 63.2
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 1.3e-88 330.9 189 84.1
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.7e-88 330.5 172 91.9
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 2.3e-88 330.1 393 56.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 5.1e-88 328.9 176 86.4
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 8.7e-88 328.2 404 51.0
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.5e-87 327.4 212 75.9
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 3.3e-87 326.2 438 59.6
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 4.3e-87 325.9 393 64.9
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 5.6e-87 325.5 195 81.0
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.6e-86 323.9 407 62.4
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.6e-86 323.9 182 86.3
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 4.8e-86 322.4 393 60.3
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 4.8e-86 322.4 393 62.6
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.4e-85 320.1 389 52.2
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 4.0e-85 319.3 387 64.1
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 9.0e-85 318.2 391 62.7
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 9.0e-85 318.2 392 63.5
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.5e-84 317.4 389 66.3
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 2.6e-84 316.6 392 63.0
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 3.4e-84 316.2 395 62.5
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 4.5e-84 315.8 391 61.6
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.7e-83 313.9 392 63.0
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 2.2e-83 313.5 389 58.6
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 2.2e-83 313.5 183 82.0
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.9e-83 313.2 393 54.7
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 4.2e-82 309.3 392 64.5
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.2e-81 307.8 458 56.8
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.6e-81 307.4 203 74.4
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 2.7e-81 306.6 389 57.6
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.3e-80 304.3 463 52.9
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 5.1e-80 302.4 204 72.1
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-79 301.2 175 80.0
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-79 301.2 175 80.0
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.3e-79 299.7 172 82.6
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 4.3e-79 299.3 466 52.1
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.3e-75 287.7 387 55.8
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 4.6e-73 279.3 177 76.8
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 4.8e-70 269.2 349 59.3
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 4.0e-69 266.2 440 43.2
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 4.2e-66 256.1 352 63.9
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 6.7e-64 248.8 159 79.9
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.3e-63 246.5 331 52.9
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.4e-61 240.4 351 61.3
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 2.6e-60 236.9 325 69.5
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 5.5e-58 229.2 360 58.6
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.4e-53 213.8 103 91.3
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.2e-52 211.5 329 54.7
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 2.7e-49 200.3 207 53.1
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 6.1e-49 199.1 321 64.2
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.5e-47 194.5 95 91.6
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.2e-46 190.7 96 89.6
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.6e-44 183.7 181 58.0
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 1.7e-43 181.0 163 55.2
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 2.2e-43 180.6 177 50.8
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 3.6e-41 173.3 315 57.1
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.0e-40 171.8 83 89.2
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 1.1e-39 168.3 110 76.4
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 3.5e-36 156.8 298 58.4
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.0e-32 145.2 91 75.8
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.1e-29 135.2 121 58.7
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 2.0e-28 131.0 77 81.8
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.2e-26 122.5 272 46.7
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 9.4e-26 122.1 58 93.1
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.4e-23 113.6 282 50.0
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.7e-23 112.8 263 54.8
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 6.3e-22 109.4 74 67.6
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.7e-20 104.0 68 67.6
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 5.5e-18 96.3 295 51.5
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 9.5e-18 95.5 45 95.6
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 2.1e-17 94.4 48 87.5
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 8.0e-17 92.4 45 93.3
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.0e-17 92.4 76 59.2
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.0e-16 90.5 326 47.2
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 6.8e-16 89.4 43 93.0
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 8.9e-16 89.0 43 90.7
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 2.6e-15 87.4 42 92.9
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 4.4e-15 86.7 61 63.9
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.5e-15 85.9 43 90.7
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 9.8e-15 85.5 43 93.0
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 1.6e-12 78.2 43 86.0
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 3.3e-10 70.5 260 48.8
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.8e-08 64.7 32 93.8
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.5e-07 61.6 30 90.0
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.9e-06 57.4 110 50.0


User provided reference genes

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