Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.5e-130 469.5 235 100.0
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.6e-113 412.9 235 88.9
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 3.4e-95 352.1 235 77.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 5.4e-93 344.7 234 76.5
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 3.4e-55 219.2 247 49.8
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 3.4e-55 219.2 279 48.0
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.5e-55 218.8 255 49.4
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.7e-54 216.9 244 52.5
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.7e-54 216.9 291 44.7
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 2.1e-52 209.9 256 47.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 7.9e-52 208.0 257 48.6
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-51 207.2 261 47.5
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 8.8e-51 204.5 245 48.2
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-50 203.8 236 50.0
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.7e-49 200.3 258 48.1
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.2e-49 199.9 254 46.5
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 4.8e-49 198.7 259 47.1
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 3.1e-48 196.1 259 45.6
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 4.1e-48 195.7 258 46.5
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.2e-47 194.1 257 46.3
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.2e-47 194.1 257 44.7
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.2e-47 194.1 255 45.5
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.2e-47 194.1 252 48.4
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 2.6e-47 193.0 271 45.4
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.5e-47 192.6 240 48.8
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.5e-47 192.6 258 45.0
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.3e-46 190.7 244 45.5
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.7e-46 190.3 254 45.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.7e-46 190.3 256 46.1
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.9e-46 189.5 258 43.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.8e-46 189.1 258 43.0
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.0e-46 188.7 253 45.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 6.5e-46 188.3 258 43.0
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.5e-45 187.2 258 43.0
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.9e-45 186.8 253 45.1
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.5e-45 186.4 258 42.6
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 2.5e-45 186.4 293 41.0
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.5e-45 186.4 259 43.2
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 4.2e-45 185.7 256 42.2
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 7.2e-45 184.9 257 45.1
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 9.4e-45 184.5 261 44.4
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.2e-44 184.1 233 44.2
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-44 183.0 258 42.2
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 6.1e-44 181.8 261 44.1
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.0e-43 181.0 266 41.4
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.0e-43 181.0 317 39.1
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 3.0e-43 179.5 263 44.5
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.0e-43 179.5 255 40.8
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.0e-43 179.5 257 41.2
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.0e-43 179.5 259 39.4
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 5.2e-43 178.7 257 42.4
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 5.2e-43 178.7 230 46.5
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.1e-42 177.6 258 41.9
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.1e-42 177.6 258 40.3
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 2.6e-42 176.4 257 42.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 3.3e-42 176.0 258 41.5
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 9.7e-42 174.5 233 45.1
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 9.7e-42 174.5 264 40.2
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.3e-41 174.1 257 40.1
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.7e-41 173.7 242 41.3
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.2e-41 173.3 248 40.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 3.7e-41 172.6 237 40.5
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 4.8e-41 172.2 244 42.2
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 6.3e-41 171.8 247 41.3
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 6.3e-41 171.8 255 42.0
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 8.2e-41 171.4 239 41.0
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 8.2e-41 171.4 239 41.0
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 3.1e-40 169.5 261 39.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 5.3e-40 168.7 245 41.2
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 5.3e-40 168.7 247 40.5
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 7.0e-40 168.3 248 42.3
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-39 167.2 157 58.6
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-39 167.2 259 42.9
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-39 166.8 244 41.4
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.0e-39 166.8 244 41.4
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 2.0e-39 166.8 258 42.2
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 3.5e-39 166.0 245 40.8
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.5e-39 165.6 160 54.4
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.7e-39 164.9 278 37.8
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.3e-38 164.1 240 42.1
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.8e-38 162.5 245 38.8
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 3.8e-38 162.5 259 38.2
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.1e-37 161.0 261 39.1
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.5e-37 160.6 278 37.4
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.9e-37 160.2 238 41.2
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.9e-37 160.2 248 42.3
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.5e-37 159.8 253 39.1
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 4.2e-37 159.1 194 45.9
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-36 157.5 221 45.7
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.2e-36 157.5 208 42.8
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.6e-36 157.1 245 39.2
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.7e-36 156.4 256 39.8
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 4.7e-36 155.6 240 42.9
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 4.7e-36 155.6 235 43.8
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.0e-35 152.9 220 41.8
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 6.8e-35 151.8 154 52.6
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 8.8e-35 151.4 168 48.8
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.2e-34 151.0 233 39.5
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.5e-34 150.6 261 39.5
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 2.0e-34 150.2 267 40.8
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 2.0e-34 150.2 274 39.8
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.4e-34 149.4 230 36.5
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 3.4e-34 149.4 168 50.0
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 4.4e-34 149.1 186 47.3
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 5.7e-34 148.7 225 37.3
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 5.7e-34 148.7 247 39.3
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 2.8e-33 146.4 127 55.1
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 4.8e-33 145.6 254 39.0
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 6.3e-33 145.2 228 43.0
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 1.1e-32 144.4 231 41.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.4e-32 144.1 127 55.9
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.8e-32 143.7 116 61.2
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 3.1e-32 142.9 127 54.3
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 3.1e-32 142.9 127 54.3
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.0e-31 140.2 164 47.0
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.5e-31 139.0 215 38.6
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.0e-30 137.9 206 42.7
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.5e-29 133.3 247 36.4
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 3.6e-28 129.4 170 44.1
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.4e-24 117.5 170 41.8
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 7.0e-24 115.2 211 38.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 2.5e-21 106.7 98 55.1
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.0e-20 101.7 169 36.1
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.0e-20 101.7 169 36.1
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.4e-19 100.9 169 36.1
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 5.7e-18 95.5 189 31.7
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.7e-17 92.8 66 65.2
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 3.2e-16 89.7 191 36.6
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 3.2e-16 89.7 157 38.9
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.0e-15 87.0 60 66.7
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.0e-14 83.2 63 60.3
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 3.9e-14 82.8 171 33.9
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 3.3e-13 79.7 91 44.0
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.2e-12 77.8 58 60.3
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.6e-12 77.4 94 50.0
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.4e-11 74.3 171 33.3
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.5e-10 70.9 113 38.1
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 3.7e-09 66.2 168 33.3
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 5.4e-08 62.4 190 27.4
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-07 59.7 50 60.0
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.8e-07 58.5 50 58.0
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.8e-07 58.5 48 52.1
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 5.0e-06 55.8 46 56.5


User provided reference genes

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