Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 0.0e+00 1575.5 817 100.0
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 0.0e+00 1543.9 817 97.9
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 0.0e+00 1099.7 820 70.2
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 0.0e+00 1092.8 817 71.0
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 3.6e-309 1064.7 812 68.0
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 6.3e-306 1053.9 784 69.3
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.2e-304 1049.7 808 68.1
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.0e-299 1032.3 822 66.1
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 7.0e-297 1023.8 799 67.6
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 2.8e-293 1011.9 802 66.6
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 4.7e-293 1011.1 820 65.0
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 2.6e-291 1005.4 834 64.3
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 7.5e-291 1003.8 820 64.3
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 2.2e-290 1002.3 815 64.8
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 8.3e-290 1000.3 816 64.3
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.6e-288 996.1 812 65.4
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.0e-288 995.7 765 67.5
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.0e-288 995.7 816 64.0
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.0e-288 995.7 813 66.2
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.5e-288 995.0 823 64.3
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 5.9e-288 994.2 805 65.5
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.3e-287 993.0 822 65.5
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 2.5e-286 988.8 765 67.2
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.3e-286 988.4 817 64.3
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 3.3e-286 988.4 802 64.1
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 1.6e-285 986.1 797 65.0
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.0e-284 981.5 797 65.4
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 1.2e-283 979.9 815 63.2
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 2.0e-283 979.2 796 65.3
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 9.8e-283 976.9 819 63.9
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.7e-282 974.9 815 62.9
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 4.6e-280 968.0 801 63.5
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.0e-280 967.6 819 63.9
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.0e-280 967.6 819 64.0
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 3.9e-279 964.9 819 62.6
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 8.6e-279 963.8 816 62.0
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.1e-277 959.1 819 63.5
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.7e-277 958.0 821 62.0
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.0e-277 957.2 868 60.5
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.4e-276 956.4 794 63.6
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.5e-275 953.0 825 62.2
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.7e-274 949.5 813 62.7
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.9e-273 946.0 815 62.6
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.4e-273 945.7 819 60.4
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 3.2e-273 945.3 815 62.7
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 1.2e-272 943.3 786 63.4
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.7e-271 939.5 815 61.7
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 2.5e-270 935.6 810 62.2
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 7.3e-270 934.1 789 63.8
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.6e-269 932.9 807 62.8
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.0e-268 928.3 811 60.0
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.5e-267 926.4 856 60.0
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 8.3e-266 920.6 819 59.6
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.4e-265 919.8 797 61.2
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 6.0e-264 914.4 815 60.6
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.0e-263 913.7 815 60.4
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 3.9e-263 911.8 817 60.8
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.2e-261 906.7 818 59.8
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 5.2e-260 901.4 797 61.9
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 5.8e-259 897.9 809 59.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 9.9e-259 897.1 821 59.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 2.2e-258 896.0 811 59.6
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.9e-258 895.6 813 60.8
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 1.2e-256 890.2 815 60.4
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 4.6e-256 888.3 812 60.3
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 4.6e-256 888.3 827 58.3
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.3e-255 886.7 730 65.1
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 3.0e-255 885.6 819 60.0
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 6.6e-255 884.4 805 60.7
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 6.6e-255 884.4 817 59.0
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 9.6e-254 880.6 812 60.1
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.6e-253 879.8 812 58.9
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.6e-253 879.8 815 58.7
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.8e-252 876.3 795 59.0
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 4.0e-252 875.2 806 58.7
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 4.0e-252 875.2 798 59.8
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.0e-251 872.8 801 60.0
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.9e-250 868.2 795 58.9
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 2.4e-249 865.9 793 59.1
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.2e-249 865.1 815 57.8
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 4.2e-249 865.1 795 58.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 4.2e-249 865.1 810 58.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 9.3e-249 864.0 819 58.5
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.6e-248 861.7 827 57.4
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 3.3e-246 855.5 800 57.4
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 5.6e-246 854.7 827 58.2
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 9.6e-246 854.0 798 59.4
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 9.6e-246 854.0 797 58.7
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 9.6e-246 854.0 798 59.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 9.6e-246 854.0 798 59.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.8e-244 849.7 797 58.6
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 5.8e-243 844.7 799 56.9
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.3e-234 817.0 821 55.2
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.5e-222 776.9 643 66.9
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 3.7e-221 772.3 813 55.8
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.9e-210 736.1 802 51.6
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.5e-202 708.4 655 59.4
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.2e-201 705.7 655 59.2
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.6e-195 686.4 646 59.0
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 3.6e-176 622.9 848 46.5
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 6.3e-173 612.1 481 66.9
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.3e-170 604.4 570 57.4
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.1e-164 584.7 459 68.4
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 4.0e-159 566.2 480 63.8
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.2e-158 564.7 483 65.0
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 5.4e-156 555.8 808 43.8
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.9e-153 547.4 487 63.4
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 5.6e-153 545.8 471 62.8
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.8e-152 543.5 512 57.8
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.4e-151 541.2 475 60.8
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 3.1e-151 540.0 475 62.3
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 4.0e-151 539.7 480 60.2
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 8.9e-151 538.5 464 61.9
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.3e-146 523.9 481 58.6
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.3e-146 523.9 481 58.6
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 2.1e-144 517.3 487 57.5
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.8e-143 514.2 453 61.4
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 8.9e-143 511.9 470 58.7
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.9e-141 506.9 463 59.4
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.4e-141 505.8 453 58.7
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.1e-140 505.0 463 58.5
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 8.1e-136 488.8 412 63.1
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.1e-135 488.4 468 58.3
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 4.4e-134 483.0 479 57.2
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 2.2e-133 480.7 709 43.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 3.5e-131 473.4 461 55.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.7e-130 471.1 705 42.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.3e-130 470.7 463 56.8
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 3.0e-130 470.3 453 57.8
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.5e-129 467.2 755 41.9
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 2.8e-128 463.8 754 38.9
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.4e-124 451.4 473 53.3
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.9e-124 451.1 469 55.2
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 9.3e-124 448.7 473 53.3
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 2.1e-123 447.6 473 53.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.1e-119 433.7 299 76.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.9e-114 416.8 461 52.9
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 8.5e-101 372.5 315 64.4
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.0e-98 365.5 282 72.3
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.3e-97 360.5 661 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 6.3e-96 356.3 463 44.9
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.7e-83 314.3 224 75.4
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 7.2e-76 289.7 197 75.6
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.5e-60 238.8 360 41.4
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.0e-54 218.4 752 27.7
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 5.9e-54 216.9 384 39.8
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.6e-51 207.6 167 65.3
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.6e-51 207.6 167 65.3
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 6.4e-48 196.8 147 63.9
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 9.2e-47 193.0 448 32.6
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 7.8e-46 189.9 142 66.9
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.9e-44 185.3 148 62.2
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.6e-29 133.7 90 68.9
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.5e-28 132.5 153 49.0
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.1e-27 128.6 153 47.1
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.1e-19 102.1 87 67.8
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.0e-17 95.5 70 61.4
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.0e-13 81.6 97 45.4
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 5.3e-10 70.9 58 58.6
SEGI_14927 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.9e-07 62.4 50 62.0


User provided reference genes

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