Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 8.2e-59 230.3 129 100.0
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 2.0e-57 225.7 129 98.4
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 2.1e-54 215.7 127 93.7
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 2.1e-54 215.7 127 93.7
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 3.0e-53 211.8 127 91.3
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 3.3e-52 208.4 127 89.8
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.3e-52 208.4 127 91.3
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 3.3e-52 208.4 127 91.3
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 9.7e-52 206.8 127 90.6
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.7e-51 206.1 127 92.9
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 1.7e-51 206.1 127 89.8
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.8e-51 205.3 126 90.5
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 4.8e-51 204.5 127 89.0
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 1.8e-50 202.6 127 88.2
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.8e-50 202.6 127 88.2
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 3.1e-50 201.8 127 86.6
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 4.1e-50 201.4 127 89.0
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 7.0e-50 200.7 127 86.6
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 1.2e-49 199.9 127 86.6
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 2.0e-49 199.1 129 88.4
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 2.6e-49 198.7 127 89.8
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 2.6e-49 198.7 127 85.8
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 3.5e-49 198.4 130 87.7
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 4.5e-49 198.0 127 86.6
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 4.5e-49 198.0 127 87.4
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 4.5e-49 198.0 131 86.3
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 5.9e-49 197.6 129 87.6
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 5.9e-49 197.6 128 87.5
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 5.9e-49 197.6 126 86.5
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 86.8
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 87.6
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 7.7e-49 197.2 131 86.3
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 2.2e-48 195.7 128 87.5
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-48 195.7 130 86.2
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 86.0
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 86.8
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 2.9e-48 195.3 128 85.2
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 3.8e-48 194.9 129 86.0
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 3.8e-48 194.9 128 85.2
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 5.0e-48 194.5 127 85.0
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 8.5e-48 193.7 127 85.0
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.1e-47 193.4 126 86.5
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.1e-47 193.4 127 83.5
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 1.5e-47 193.0 129 85.3
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.5e-47 193.0 127 83.5
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.9e-47 192.6 131 84.0
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 2.5e-47 192.2 129 85.3
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 3.2e-47 191.8 129 85.3
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 3.2e-47 191.8 126 85.7
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 3.2e-47 191.8 127 84.3
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 3.2e-47 191.8 127 84.3
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 4.2e-47 191.4 128 84.4
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 4.2e-47 191.4 127 83.5
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 5.5e-47 191.0 127 84.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 7.2e-47 190.7 129 83.7
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 9.4e-47 190.3 126 84.1
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.1e-46 189.1 127 81.9
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 2.7e-46 188.7 127 84.3
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 4.7e-46 188.0 127 82.7
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 4.7e-46 188.0 127 81.1
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 4.7e-46 188.0 127 81.1
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 8.0e-46 187.2 127 84.3
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.0e-45 185.3 148 74.3
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 4.0e-45 184.9 122 86.1
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 5.2e-45 184.5 121 86.8
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 5.2e-45 184.5 114 90.4
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 6.7e-45 184.1 121 86.0
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 8.8e-45 183.7 117 88.9
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.5e-44 183.0 127 78.7
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 2.0e-44 182.6 122 84.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 2.0e-44 182.6 120 86.7
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 3.3e-44 181.8 114 88.6
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 5.7e-44 181.0 128 81.2
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.3e-43 179.9 114 87.7
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.3e-43 179.9 128 82.0
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 3.7e-43 178.3 114 88.6
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.7e-43 178.3 160 68.8
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.1e-42 176.8 128 82.0
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.1e-42 176.8 114 84.2
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.1e-42 176.8 127 79.5
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 2.4e-42 175.6 114 86.8
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 3.1e-42 175.3 127 79.5
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 3.1e-42 175.3 115 87.8
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.1e-42 175.3 117 86.3
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 4.1e-42 174.9 114 85.1
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 4.1e-42 174.9 114 85.1
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.2e-41 173.3 127 78.7
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.2e-41 173.3 126 79.4
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 2.0e-41 172.6 127 78.7
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 2.9e-40 168.7 127 77.2
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 3.8e-40 168.3 110 85.5
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.1e-39 166.8 127 78.0
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 1.5e-39 166.4 130 76.9
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 1.9e-39 166.0 114 83.3
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 5.5e-39 164.5 127 77.2
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.6e-38 162.9 126 75.4
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 3.6e-38 161.8 127 76.4
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 4.7e-38 161.4 150 66.0
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.8e-37 159.5 129 76.0
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.8e-37 159.5 129 76.0
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 2.3e-37 159.1 130 74.6
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 5.7e-36 154.5 114 78.1
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 5.7e-36 154.5 110 80.9
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.7e-35 151.8 130 73.1
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.8e-34 149.4 129 72.1
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.4e-34 149.1 126 69.0
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.4e-34 149.1 126 70.6
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.6e-33 146.4 130 70.8
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 3.8e-32 141.7 127 67.7
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 6.5e-32 141.0 130 69.2
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 8.6e-32 140.6 95 83.2
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 8.6e-32 140.6 142 64.1
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 1.1e-31 140.2 117 74.4
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 1.5e-31 139.8 114 71.9
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 3.2e-31 138.7 110 73.6
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 2.1e-30 136.0 129 66.7
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.3e-29 132.5 104 76.0
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 8.8e-29 130.6 94 76.6
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.2e-27 125.9 82 87.8
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.1e-26 123.6 126 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 1.8e-26 122.9 82 80.5
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.8e-26 122.9 132 60.6
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 7.0e-26 120.9 80 83.8
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 5.9e-25 117.9 125 60.0
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 2.9e-24 115.5 79 79.7
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.9e-23 112.8 64 95.3
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 7.3e-23 110.9 66 89.4
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.6e-22 109.8 134 57.5
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.8e-21 106.3 68 83.8
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 4.4e-20 101.7 85 63.5
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 9.8e-20 100.5 66 83.3
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 4.9e-19 98.2 268 34.3
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 1.1e-18 97.1 119 51.3
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.2e-18 95.5 58 87.9
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 4.1e-18 95.1 64 84.4
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.6e-17 93.2 60 83.3
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 4.6e-17 91.7 54 94.4
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 1.9e-15 86.3 61 77.0
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.9e-15 86.3 52 88.5
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 4.7e-14 81.6 85 51.8
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 6.2e-14 81.3 73 68.5
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 4.1e-10 68.6 48 83.3
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 4.3e-07 58.5 40 80.0


User provided reference genes

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