Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.7e-85 319.7 214 100.0
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 9.4e-76 287.3 214 82.2
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 4.9e-48 195.3 216 55.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.4e-47 193.0 215 55.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 2.1e-43 179.9 217 52.1
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.0e-42 177.6 218 51.4
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 6.8e-42 174.9 211 54.0
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 8.9e-42 174.5 229 60.3
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.2e-41 174.1 211 50.7
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 4.4e-41 172.2 236 48.7
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.3e-40 170.6 230 48.3
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.3e-40 170.6 220 50.0
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 2.2e-40 169.9 229 48.5
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 2.2e-40 169.9 234 47.9
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 2.9e-40 169.5 234 47.0
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 2.9e-40 169.5 217 51.6
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.9e-40 169.5 217 48.4
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 3.7e-40 169.1 218 50.0
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 6.4e-40 168.3 219 50.7
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.1e-39 167.5 239 48.5
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.1e-39 167.5 228 48.7
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.0e-39 164.9 229 49.3
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 9.2e-39 164.5 231 47.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.2e-38 164.1 233 46.8
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.6e-38 163.7 229 49.3
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.0e-38 163.3 229 49.3
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 4.6e-38 162.2 212 50.5
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.3e-37 160.6 226 53.5
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.7e-37 160.2 231 46.8
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.7e-37 160.2 243 45.3
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 2.3e-37 159.8 221 49.3
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.3e-37 159.8 223 48.4
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.0e-37 159.5 229 47.6
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 5.0e-37 158.7 223 48.0
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 8.6e-37 157.9 159 61.0
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 8.6e-37 157.9 218 49.5
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 1.5e-36 157.1 227 52.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.5e-36 157.1 265 43.0
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 4.3e-36 155.6 212 48.6
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 4.3e-36 155.6 215 47.9
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 4.3e-36 155.6 259 42.5
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 5.6e-36 155.2 227 45.8
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 5.6e-36 155.2 230 47.0
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 7.3e-36 154.8 221 47.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 9.5e-36 154.5 224 46.4
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 9.5e-36 154.5 215 47.4
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.2e-35 154.1 212 48.1
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.1e-35 153.3 221 46.2
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.8e-35 152.9 221 46.2
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.8e-35 152.9 226 55.3
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 4.7e-35 152.1 222 46.4
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 4.7e-35 152.1 200 49.0
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 4.7e-35 152.1 208 44.7
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 6.2e-35 151.8 222 45.5
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 8.0e-35 151.4 229 44.5
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 8.0e-35 151.4 226 46.0
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.0e-34 151.0 205 47.8
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.8e-34 150.2 222 45.9
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.3e-34 149.8 221 44.3
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.1e-34 149.4 213 45.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 8.9e-34 147.9 207 47.3
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.2e-33 147.5 219 45.7
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.2e-33 147.5 230 45.2
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.5e-33 147.1 221 52.9
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 2.0e-33 146.7 215 48.4
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 2.6e-33 146.4 242 45.0
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.4e-33 146.0 139 60.4
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.4e-33 145.6 277 39.7
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 5.8e-33 145.2 230 43.9
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.5e-33 144.8 215 47.4
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 7.5e-33 144.8 227 43.6
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 9.8e-33 144.4 206 46.6
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.7e-32 143.7 229 45.0
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.7e-32 143.7 223 43.9
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.7e-32 143.7 218 45.9
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 2.2e-32 143.3 205 47.3
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 2.2e-32 143.3 257 42.0
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 4.9e-32 142.1 231 42.9
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.4e-31 140.6 134 61.2
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.4e-31 140.6 134 61.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.9e-31 140.2 212 44.8
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.9e-31 140.2 226 45.6
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.4e-31 139.8 136 60.3
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 3.2e-31 139.4 202 45.0
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.6e-30 137.1 207 44.0
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.6e-30 135.6 96 76.0
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.0e-29 134.4 217 42.9
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.3e-29 134.0 236 40.3
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.3e-29 133.3 209 42.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 2.3e-29 133.3 232 42.7
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 2.3e-29 133.3 224 39.7
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 5.0e-29 132.1 199 43.7
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 5.0e-29 132.1 218 45.4
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.1e-28 131.0 204 42.2
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.1e-28 131.0 214 40.7
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.1e-28 131.0 294 36.7
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 2.5e-28 129.8 219 42.5
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 4.3e-28 129.0 229 39.7
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 7.3e-28 128.3 229 41.5
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 7.3e-28 128.3 218 41.3
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.2e-27 127.5 216 44.9
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.6e-27 127.1 213 42.3
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 2.1e-27 126.7 218 39.9
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.8e-27 126.3 213 41.3
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 2.3e-26 123.2 213 40.8
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 8.9e-26 121.3 332 33.1
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 2.6e-25 119.8 202 41.6
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.6e-25 119.8 213 39.9
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.6e-25 119.8 213 39.9
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.6e-25 119.8 209 43.1
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 5.8e-25 118.6 224 39.3
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.7e-24 117.1 215 42.3
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.1e-23 112.5 169 45.0
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 5.4e-23 112.1 225 36.9
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 4.6e-22 109.0 224 38.4
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 6.0e-22 108.6 212 38.2
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.0e-21 107.8 257 32.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.0e-21 107.8 257 32.7
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.0e-21 107.8 70 78.6
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.5e-20 103.2 207 40.6
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.5e-20 103.2 207 40.6
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 4.3e-20 102.4 118 55.9
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 7.3e-20 101.7 128 50.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.1e-19 100.1 216 36.1
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.1e-19 100.1 216 36.1
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.1e-19 100.1 216 36.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 2.1e-19 100.1 219 38.8
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-18 97.8 218 35.8
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.1e-18 97.8 218 35.8
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 1.4e-18 97.4 88 60.2
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.2e-11 74.3 49 67.3
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.7e-11 72.4 118 42.4
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.2e-09 67.8 152 36.8
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.4e-09 65.9 83 53.0
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 7.6e-09 65.1 40 77.5
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.7e-08 63.9 162 36.4
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.2e-08 63.5 141 34.0
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 7.1e-07 58.5 42 61.9
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 9.3e-07 58.2 158 28.5
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 2.7e-06 56.6 50 58.0
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 2.7e-06 56.6 50 58.0
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 3.5e-06 56.2 109 38.5
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 7.8e-06 55.1 126 34.1


User provided reference genes

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