Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 1.2e-233 812.8 390 100.0
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 1.4e-199 699.5 384 87.5
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 1.4e-199 699.5 384 87.5
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 3.0e-173 612.1 386 77.5
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 2.6e-172 609.0 389 76.9
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 3.9e-136 488.8 384 62.8
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 3.3e-111 406.0 377 53.8
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.9e-95 353.6 373 47.7
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.8e-94 349.0 377 48.8
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 3.1e-93 346.3 371 46.9
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 5.0e-91 339.0 377 45.9
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 8.4e-91 338.2 369 46.9
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 4.2e-90 335.9 372 46.5
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 5.5e-90 335.5 383 47.0
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.6e-89 334.0 377 48.0
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 2.1e-89 333.6 375 45.9
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 4.6e-89 332.4 371 44.5
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.3e-88 330.9 373 46.1
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.8e-88 330.5 369 46.3
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 3.0e-88 329.7 387 45.0
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 6.7e-88 328.6 370 44.9
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.5e-87 327.4 369 45.5
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.9e-87 327.0 369 45.3
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.8e-86 323.2 366 46.2
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 2.8e-86 323.2 367 46.3
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.1e-85 321.2 366 45.1
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 2.4e-85 320.1 358 46.9
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-85 320.1 190 80.0
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 6.9e-85 318.5 369 43.9
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 6.9e-85 318.5 367 45.5
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.2e-84 317.8 376 45.2
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.0e-84 317.0 367 45.0
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 2.2e-83 313.5 381 42.3
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 6.5e-83 312.0 384 42.4
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 6.5e-83 312.0 354 43.5
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 8.5e-83 311.6 376 43.4
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.5e-82 310.1 372 43.8
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 4.2e-82 309.3 373 43.2
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 4.2e-82 309.3 379 43.8
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.6e-81 307.4 368 42.1
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-81 307.4 373 45.3
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.1e-81 307.0 390 41.8
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 6.1e-81 305.4 346 46.8
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 7.9e-81 305.1 373 44.2
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.0e-80 304.7 369 43.4
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.4e-80 304.3 390 41.3
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.5e-79 300.8 372 44.1
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.3e-79 299.3 370 44.1
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.7e-79 298.9 373 42.6
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 7.4e-79 298.5 376 42.6
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.3e-78 297.7 375 41.9
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.3e-78 297.7 363 43.3
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.8e-78 296.6 371 44.2
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 3.7e-78 296.2 222 63.1
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.4e-77 294.3 373 42.1
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.4e-77 294.3 371 43.4
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.4e-77 293.5 367 42.5
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 2.4e-77 293.5 370 43.0
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 5.3e-77 292.4 370 41.4
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.5e-76 290.8 383 41.0
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.6e-76 290.0 372 42.5
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 4.5e-76 289.3 370 41.4
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 4.5e-76 289.3 368 41.3
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.0e-75 288.1 360 40.6
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.0e-75 288.1 385 40.8
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 1.7e-75 287.3 395 44.1
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 3.8e-75 286.2 369 41.2
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.8e-75 286.2 400 39.2
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.1e-74 284.6 397 38.0
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.1e-74 284.6 361 42.1
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.9e-74 283.9 392 38.5
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 3.2e-74 283.1 406 42.6
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 7.2e-74 282.0 373 41.0
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 7.2e-74 282.0 373 42.6
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 7.2e-74 282.0 361 41.8
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.2e-73 281.2 374 42.2
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.6e-73 279.6 373 41.3
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 6.1e-73 278.9 367 41.1
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.4e-72 277.7 371 41.0
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 2.3e-72 276.9 370 41.4
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 2.3e-72 276.9 363 42.7
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 5.1e-72 275.8 366 42.1
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.5e-71 274.2 339 41.0
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.5e-71 274.2 365 43.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.5e-71 274.2 384 41.9
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.0e-71 273.9 375 41.1
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 9.7e-71 271.6 373 39.7
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 9.7e-71 271.6 369 40.1
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 3.7e-70 269.6 366 38.0
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 3.7e-70 269.6 375 38.7
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.2e-70 268.5 311 44.1
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 5.3e-69 265.8 378 39.9
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 7.0e-69 265.4 379 37.2
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 1.2e-68 264.6 378 39.7
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.2e-65 254.6 384 38.5
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 8.0e-65 251.9 260 48.1
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 1.4e-64 251.1 369 37.7
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 3.0e-64 250.0 387 37.5
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 4.0e-64 249.6 369 36.0
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 6.7e-64 248.8 378 38.1
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 8.8e-64 248.4 387 37.2
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 1.1e-63 248.1 338 40.2
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.1e-63 248.1 248 51.2
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 2.6e-63 246.9 381 36.5
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 3.3e-63 246.5 379 37.7
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 4.4e-63 246.1 370 38.4
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 7.5e-63 245.4 389 36.8
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.3e-62 244.6 368 38.3
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.7e-62 244.2 372 37.1
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 1.7e-62 244.2 268 44.4
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 3.7e-62 243.0 376 37.2
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.7e-62 243.0 380 36.6
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 8.2e-62 241.9 376 36.2
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 1.1e-61 241.5 373 38.1
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.1e-61 241.5 373 38.6
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 3.1e-61 240.0 372 39.5
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 4.1e-61 239.6 374 36.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 7.0e-61 238.8 371 38.0
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.6e-60 237.7 377 37.7
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.0e-60 237.3 270 42.6
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 1.0e-59 235.0 378 36.5
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 2.2e-59 233.8 375 34.9
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 3.8e-59 233.0 381 37.3
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 6.8e-56 222.2 396 36.9
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 1.2e-55 221.5 372 36.3
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 5.7e-55 219.2 269 43.9
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 8.3e-54 215.3 288 41.7
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 4.5e-52 209.5 371 35.8
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.1e-49 200.7 221 46.6
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.0e-49 198.7 270 40.7
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.4e-45 188.0 361 32.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 4.5e-44 183.0 223 43.9
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.8e-37 161.0 198 46.0
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 5.0e-35 152.9 386 29.5
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 6.2e-33 146.0 356 29.8
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.3e-27 127.5 396 27.8
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 3.9e-27 126.7 196 37.8
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 8.6e-27 125.6 203 38.9
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 4.7e-25 119.8 352 27.6
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 8.9e-24 115.5 352 27.0
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 8.9e-24 115.5 352 27.0
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.2e-23 115.2 333 26.4
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 1.5e-23 114.8 352 27.0
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.0e-23 114.4 357 27.2
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.3e-22 111.7 346 27.2
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 2.2e-22 110.9 352 26.1
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 2.2e-22 110.9 352 26.1
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 9.2e-21 105.5 368 23.9
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 3.9e-19 100.1 337 25.8
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 5.1e-19 99.8 307 28.3
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 8.6e-19 99.0 308 27.6
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 8.6e-19 99.0 308 27.6
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.6e-19 99.0 263 31.2
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 8.6e-19 99.0 353 25.5
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.1e-18 98.6 286 26.6
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.5e-18 98.2 90 53.3
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.5e-18 98.2 219 30.1
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 9.5e-18 95.5 241 28.2
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 1.6e-17 94.7 306 28.1
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 6.2e-17 92.8 383 24.3
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 1.1e-16 92.0 363 24.5
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.4e-16 91.7 344 24.1
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 4.0e-16 90.1 117 45.3
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 6.8e-16 89.4 354 25.1
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 8.9e-16 89.0 126 34.9
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 1.7e-14 84.7 171 32.2
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 8.4e-14 82.4 285 25.6
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.1e-13 82.0 94 47.9
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.1e-13 82.0 325 22.8
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 6.6e-11 72.8 85 41.2
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.5e-10 71.6 362 25.1
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 7.6e-07 59.3 283 23.7


User provided reference genes

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