Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO135G0334 Papaver somniferum HOM05D001728 ORTHO05D004321 5.0e-82 307.8 159 100.0
PSO724G0814 Papaver somniferum HOM05D001728 ORTHO05D004321 8.8e-71 270.4 142 97.9
TAR624G0656 Trochodendron aralioides HOM05D001728 ORTHO05D004321 1.2e-38 163.7 142 62.0
TAR626G1627 Trochodendron aralioides HOM05D001728 ORTHO05D004321 1.4e-36 156.8 144 63.2
Cfa003458 Carpinus fangiana HOM05D001728 ORTHO05D004321 2.3e-34 149.4 142 58.5
MELO3C022707.2 Cucumis melo HOM05D001728 ORTHO05D004321 3.9e-34 148.7 144 57.6
CsaV3_3G031050 Cucumis sativus L. HOM05D001728 ORTHO05D004321 3.9e-34 148.7 144 58.3
ClCG07G014270 Citrullus lanatus HOM05D001728 ORTHO05D004321 1.1e-33 147.1 144 56.2
Glyma.16G014400 Glycine max HOM05D001728 ORTHO05D004321 1.5e-33 146.7 141 56.7
Glyma.07G046200 Glycine max HOM05D001728 ORTHO05D004321 1.9e-33 146.4 141 57.4
Prupe.3G030700 Prunus persica HOM05D001728 ORTHO05D004321 3.3e-33 145.6 141 57.4
Ciclev10026383m.g Citrus clementina HOM05D001728 ORTHO05D004321 4.3e-33 145.2 140 57.9
Eucgr.J02593 Eucalyptus grandis HOM05D001728 ORTHO05D004321 5.6e-33 144.8 144 54.9
Actinidia31146 Actinidia chinensis HOM05D001728 ORTHO05D004321 7.3e-33 144.4 140 56.4
Lalb_Chr04g0253961 Lupinus albus HOM05D001728 ORTHO05D004321 9.5e-33 144.1 140 55.7
Medtr8g023380 Medicago truncatula HOM05D001728 ORTHO05D004321 1.2e-32 143.7 141 54.6
THA.LOC104812276 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 1.2e-32 143.7 140 57.1
VMungo0331G1763 Vigna mungo HOM05D001728 ORTHO05D004321 1.2e-32 143.7 143 56.6
GSVIVG01016663001 Vitis vinifera HOM05D001728 ORTHO05D004321 1.6e-32 143.3 140 58.6
Lalb_Chr17g0343191 Lupinus albus HOM05D001728 ORTHO05D004321 2.1e-32 142.9 141 58.9
vmacro18718 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 2.1e-32 142.9 141 57.4
vmacro18772 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 2.1e-32 142.9 141 57.4
arahy.Tifrunner.gnm1.ann1.158S68 Arachis hypogaea HOM05D001728 ORTHO05D004321 2.8e-32 142.5 141 58.9
Sp1g15410 Schrenkiella parvula HOM05D001728 ORTHO05D004321 2.8e-32 142.5 140 56.4
Rhsim08G0245100 Rhododendron simsii HOM05D001728 ORTHO05D004321 3.6e-32 142.1 141 59.6
Solyc03g123660.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 3.6e-32 142.1 142 59.9
Sopen03g041430 Solanum pennellii HOM05D001728 ORTHO05D004321 3.6e-32 142.1 142 59.9
CiPaw.01G211100 Carya illinoinensis HOM05D001728 ORTHO05D004321 6.2e-32 141.4 141 55.3
Cc04_g00660 Coffea canephora HOM05D001728 ORTHO05D004321 6.2e-32 141.4 143 57.3
CAN.G790.54 Capsicum annuum HOM05D001728 ORTHO05D004321 1.1e-31 140.6 140 57.9
AT1G17280 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 1.4e-31 140.2 142 55.6
QL05p000874 Quercus lobata HOM05D001728 ORTHO05D004321 1.4e-31 140.2 142 54.9
QL05p001120 Quercus lobata HOM05D001728 ORTHO05D004321 1.4e-31 140.2 142 54.9
Cpa.g.sc25.198 Carica papaya HOM05D001728 ORTHO05D004321 1.8e-31 139.8 141 57.4
CiPaw.02G130700 Carya illinoinensis HOM05D001728 ORTHO05D004321 1.8e-31 139.8 141 57.4
Phvul.010G122800 Phaseolus vulgaris HOM05D001728 ORTHO05D004321 1.8e-31 139.8 143 55.9
Peaxi162Scf00038g02337 Petunia axillaris HOM05D001728 ORTHO05D004321 2.3e-31 139.4 142 60.6
Aa31LG7G2090 Aethionema arabicum HOM05D001728 ORTHO05D004321 4.0e-31 138.7 142 53.5
BcaC05g25652 Brassica carinata HOM05D001728 ORTHO05D004321 4.0e-31 138.7 140 58.6
A06p13230 Brassica napus HOM05D001728 ORTHO05D004321 4.0e-31 138.7 140 58.6
BolC5t30274H Brassica oleracea HOM05D001728 ORTHO05D004321 4.0e-31 138.7 140 58.6
BraA06t24476Z Brassica rapa HOM05D001728 ORTHO05D004321 4.0e-31 138.7 140 58.6
FAN02G4585 Fragaria x ananassa HOM05D001728 ORTHO05D004321 5.2e-31 138.3 143 57.3
Psat4g164960 Pisum sativum HOM05D001728 ORTHO05D004321 5.2e-31 138.3 140 54.3
C08p43970 Brassica napus HOM05D001728 ORTHO05D004321 6.8e-31 137.9 140 55.7
Duzib235G0145 Durio zibethinus HOM05D001728 ORTHO05D004321 6.8e-31 137.9 140 52.9
Lj5A28G49 Lonicera japonica HOM05D001728 ORTHO05D004321 6.8e-31 137.9 146 54.1
BcaC07g41410 Brassica carinata HOM05D001728 ORTHO05D004321 8.9e-31 137.5 140 54.3
Ca_23449_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004321 8.9e-31 137.5 140 57.1
AL1G29530 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 1.2e-30 137.1 142 57.0
C05p15670 Brassica napus HOM05D001728 ORTHO05D004321 1.2e-30 137.1 140 57.1
Sed0008897 Sechium edule HOM05D001728 ORTHO05D004321 1.2e-30 137.1 142 54.2
arahy.Tifrunner.gnm1.ann1.FK8434 Arachis hypogaea HOM05D001728 ORTHO05D004321 1.5e-30 136.7 146 56.8
A09p60490 Brassica napus HOM05D001728 ORTHO05D004321 1.5e-30 136.7 145 53.1
BraA09t41420Z Brassica rapa HOM05D001728 ORTHO05D004321 1.5e-30 136.7 145 53.1
Carub.0001s1704 Capsella rubella HOM05D001728 ORTHO05D004321 2.0e-30 136.3 140 54.3
MBI19_g32874_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 2.0e-30 136.3 153 53.6
BolC8t51946H Brassica oleracea HOM05D001728 ORTHO05D004321 2.6e-30 136.0 140 55.0
FAN14G1964 Fragaria x ananassa HOM05D001728 ORTHO05D004321 2.6e-30 136.0 144 56.2
Sed0018882 Sechium edule HOM05D001728 ORTHO05D004321 2.6e-30 136.0 142 53.5
Lj9A539T85 Lonicera japonica HOM05D001728 ORTHO05D004321 4.4e-30 135.2 145 55.9
RcHm_v2.0_Chr2g0148081 Rosa chinensis HOM05D001728 ORTHO05D004321 4.4e-30 135.2 143 55.2
FvH4_6g35920 Fragaria vesca HOM05D001728 ORTHO05D004321 5.8e-30 134.8 143 55.9
FAN05G3900 Fragaria x ananassa HOM05D001728 ORTHO05D004321 5.8e-30 134.8 144 54.9
FAN09G1109 Fragaria x ananassa HOM05D001728 ORTHO05D004321 5.8e-30 134.8 143 55.9
FAN14G5216 Fragaria x ananassa HOM05D001728 ORTHO05D004321 5.8e-30 134.8 143 55.9
Hma1.2p1_1999F.1_g310540 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 5.8e-30 134.8 140 55.7
TPR.G29473 Trifolium pratense HOM05D001728 ORTHO05D004321 5.8e-30 134.8 140 55.7
Aqoxy7G00928 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 7.6e-30 134.4 141 54.6
Thecc.06G130700 Theobroma cacao HOM05D001728 ORTHO05D004321 7.6e-30 134.4 140 55.0
Hma1.2p1_0090F.1_g045760 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 9.9e-30 134.0 141 53.9
Hma1.2p1_2628F.1_g325685 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 9.9e-30 134.0 141 53.9
ATR0099G071 Amborella trichopoda HOM05D001728 ORTHO05D004321 1.7e-29 133.3 141 56.7
Hund05701 Selenicereus undatus HOM05D001728 ORTHO05D004321 1.7e-29 133.3 141 57.4
SalBow6G2824 Salvia bowleyana HOM05D001728 ORTHO05D004321 2.2e-29 132.9 140 53.6
C08p17810 Brassica napus HOM05D001728 ORTHO05D004321 2.9e-29 132.5 140 53.6
BolC8t49407H Brassica oleracea HOM05D001728 ORTHO05D004321 2.9e-29 132.5 140 53.6
PGSC0003DMG401004867 Solanum tuberosum HOM05D001728 ORTHO05D004321 2.9e-29 132.5 142 55.6
BcaC07g41430 Brassica carinata HOM05D001728 ORTHO05D004321 3.7e-29 132.1 140 53.6
CARHR017870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 4.9e-29 131.7 140 52.9
Manes.04G151300 Manihot esculenta HOM05D001728 ORTHO05D004321 8.4e-29 131.0 145 53.1
ECA232G0029 Erigeron canadensis HOM05D001728 ORTHO05D004321 1.1e-28 130.6 140 56.4
HanXRQChr09g0277281 Helianthus annuus HOM05D001728 ORTHO05D004321 1.1e-28 130.6 141 52.5
Manes.11G012300 Manihot esculenta HOM05D001728 ORTHO05D004321 1.1e-28 130.6 141 53.2
Sopen06g022550 Solanum pennellii HOM05D001728 ORTHO05D004321 1.4e-28 130.2 142 54.9
Gohir.A06G142800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.4e-28 129.4 142 50.7
A08p30990 Brassica napus HOM05D001728 ORTHO05D004321 3.2e-28 129.0 140 52.9
BraA08t35028Z Brassica rapa HOM05D001728 ORTHO05D004321 3.2e-28 129.0 140 52.9
Migut.I01136 Erythranthe guttata HOM05D001728 ORTHO05D004321 3.2e-28 129.0 143 51.7
Solyc06g063100.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 3.2e-28 129.0 142 54.2
Lalb_Chr04g0261251 Lupinus albus HOM05D001728 ORTHO05D004321 4.1e-28 128.6 140 52.9
Oeu006754.1 Olea europaea HOM05D001728 ORTHO05D004321 4.1e-28 128.6 142 54.2
BcaB03g13008 Brassica carinata HOM05D001728 ORTHO05D004321 5.4e-28 128.3 141 53.2
Lj3g0026896 Lotus japonicus HOM05D001728 ORTHO05D004321 7.1e-28 127.9 141 53.2
PGR102G2367 Punica granatum HOM05D001728 ORTHO05D004321 7.1e-28 127.9 145 51.7
CAN.G1682.23 Capsicum annuum HOM05D001728 ORTHO05D004321 1.2e-27 127.1 142 54.2
Gohir.D06G148500 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.2e-27 127.1 146 50.0
Oeu015470.1 Olea europaea HOM05D001728 ORTHO05D004321 1.2e-27 127.1 142 52.8
THA.LOC104813967 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 1.2e-27 127.1 140 52.9
CARHR257870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 1.6e-27 126.7 142 49.3
AUR62025612 Chenopodium quinoa HOM05D001728 ORTHO05D004321 2.1e-27 126.3 147 51.0
AUR62043500 Chenopodium quinoa HOM05D001728 ORTHO05D004321 2.1e-27 126.3 147 51.0
COL.COLO4_30874 Corchorus olitorius HOM05D001728 ORTHO05D004321 2.1e-27 126.3 141 52.5
CANSAT56G0906 Cannabis sativa HOM05D001728 ORTHO05D004321 2.7e-27 125.9 145 51.0
Gorai.010G173000 Gossypium raimondii HOM05D001728 ORTHO05D004321 2.7e-27 125.9 142 50.0
Thhalv10009625m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 3.5e-27 125.6 140 53.6
MD17G1154600 Malus domestica HOM05D001728 ORTHO05D004321 3.5e-27 125.6 141 53.2
MD09G1172300 Malus domestica HOM05D001728 ORTHO05D004321 4.6e-27 125.2 141 51.8
SEGI_06866 Sequoiadendron giganteum HOM05D001728 ORTHO05D004321 4.6e-27 125.2 139 49.6
Lsat_1_v5_gn_4_90580 Lactuca sativa HOM05D001728 ORTHO05D004321 6.0e-27 124.8 140 49.3
Nitab4.5_0006966g0050 Nicotiana tabacum HOM05D001728 ORTHO05D004321 6.0e-27 124.8 143 52.4
Sabra01G0130400 Salix brachista HOM05D001728 ORTHO05D004321 6.0e-27 124.8 140 52.1
AT5G50430 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 7.8e-27 124.4 144 51.4
Potri.001G162200 Populus trichocarpa HOM05D001728 ORTHO05D004321 7.8e-27 124.4 141 52.5
Ah.15g094900 Amaranthus hybridus HOM05D001728 ORTHO05D004321 1.0e-26 124.0 140 52.1
Nitab4.5_0006338g0070 Nicotiana tabacum HOM05D001728 ORTHO05D004321 1.0e-26 124.0 143 51.7
TWI14G1006 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 1.0e-26 124.0 142 52.1
DCAR_007661 Daucus carota HOM05D001728 ORTHO05D004321 1.7e-26 123.2 140 52.1
SGA_v2.0_scaffold122G33304 Striga asiatica HOM05D001728 ORTHO05D004321 1.7e-26 123.2 143 53.1
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 3.0e-26 122.5 132 54.5
PGSC0003DMG400009150 Solanum tuberosum HOM05D001728 ORTHO05D004321 3.0e-26 122.5 132 56.8
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 3.9e-26 122.1 131 57.3
Thhalv10014520m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 6.6e-26 121.3 144 50.0
TWI23G0186 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 1.1e-25 120.6 142 49.3
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 1.5e-25 120.2 134 52.2
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.9e-25 119.8 132 50.0
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 1.9e-25 119.8 155 47.7
Zm00001eb374150 Zea mays HOM05D001728 ORTHO05D004321 1.9e-25 119.8 143 49.0
AUR62001400 Chenopodium quinoa HOM05D001728 ORTHO05D004321 4.3e-25 118.6 147 51.0
Aqoxy549s001 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 5.6e-25 118.2 134 50.7
Duzib160G0016 Durio zibethinus HOM05D001728 ORTHO05D004321 5.6e-25 118.2 140 50.0
Pp3c22_19100 Physcomitrium patens HOM05D001728 ORTHO05D004321 1.6e-24 116.7 140 50.7
Os06g0193000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004321 2.8e-24 115.9 143 46.9
Hund18634 Selenicereus undatus HOM05D001728 ORTHO05D004321 6.2e-24 114.8 189 41.8
AL8G24660 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 8.1e-24 114.4 140 48.6
MSTRG.10907 Avicennia marina HOM05D001728 ORTHO05D004321 8.1e-24 114.4 140 50.0
vmacro22013 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 8.1e-24 114.4 140 50.0
Zm00001eb278450 Zea mays HOM05D001728 ORTHO05D004321 8.1e-24 114.4 143 48.3
Oeu053418.1 Olea europaea HOM05D001728 ORTHO05D004321 1.1e-23 114.0 131 48.1
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.2e-23 111.7 133 48.9
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 5.2e-23 111.7 133 48.9
BcaC07g38844 Brassica carinata HOM05D001728 ORTHO05D004321 6.8e-23 111.3 137 48.9
CDE07G0536 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 8.9e-23 110.9 140 44.3
Carub.0008s1054 Capsella rubella HOM05D001728 ORTHO05D004321 1.2e-22 110.5 140 47.9
EL10Ac7g16497 Beta vulgaris HOM05D001728 ORTHO05D004321 2.9e-21 105.9 157 44.6
Mapoly0008s0153 Marchantia polymorpha HOM05D001728 ORTHO05D004321 3.8e-21 105.5 89 66.3
Nitab4.5_0006190g0040 Nicotiana tabacum HOM05D001728 ORTHO05D004321 4.9e-21 105.1 124 50.0
Peaxi162Scf00207g01547 Petunia axillaris HOM05D001728 ORTHO05D004321 4.9e-21 105.1 85 67.1
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.1e-20 104.0 134 44.8
Sc15g0004040 Simmondsia chinensis HOM05D001728 ORTHO05D004321 1.1e-20 104.0 82 69.5
HPP92_009327 Vanilla planifolia HOM05D001728 ORTHO05D004321 2.4e-20 102.8 146 44.5
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 3.2e-20 102.4 72 68.1
Zm00001eb028890 Zea mays HOM05D001728 ORTHO05D004321 1.6e-19 100.1 133 46.6
Zm00001eb210040 Zea mays HOM05D001728 ORTHO05D004321 1.6e-19 100.1 133 46.6
Zm00001eb329650 Zea mays HOM05D001728 ORTHO05D004321 1.6e-19 100.1 130 46.9
Zm00001eb399730 Zea mays HOM05D001728 ORTHO05D004321 1.6e-19 100.1 133 46.6
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 2.1e-19 99.8 69 68.1
Nitab4.5_0009717g0020 Nicotiana tabacum HOM05D001728 ORTHO05D004321 3.5e-19 99.0 122 46.7
AagrBONN_evm.TU.Sc2ySwM_228.340 Anthoceros agrestis HOM05D001728 ORTHO05D004321 7.8e-19 97.8 128 43.8
Potri.003G073100 Populus trichocarpa HOM05D001728 ORTHO05D004321 7.8e-19 97.8 69 69.6
SMO347G0576 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 3.0e-18 95.9 142 45.1
SMO236G0070 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 8.7e-18 94.4 141 44.7
AUR62043999 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.5e-17 93.6 65 75.4
Zm00001eb315560 Zea mays HOM05D001728 ORTHO05D004321 3.3e-17 92.4 128 45.3
unitig_26.g8911 Utricularia gibba HOM05D001728 ORTHO05D004321 9.6e-17 90.9 63 69.8
Zm00001eb171360 Zea mays HOM05D001728 ORTHO05D004321 1.3e-16 90.5 127 44.9
Zm00001eb241260 Zea mays HOM05D001728 ORTHO05D004321 1.3e-16 90.5 127 44.9
Atru.chr1.4160 Acer truncatum HOM05D001728 ORTHO05D004321 2.4e-15 86.3 50 84.0
Zm00001eb367340 Zea mays HOM05D001728 ORTHO05D004321 9.0e-15 84.3 68 64.7
Ah.08g217390 Amaranthus hybridus HOM05D001728 ORTHO05D004321 4.4e-14 82.0 179 35.2
MBI13_g01656_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 1.3e-13 80.5 101 50.5
Cre08.g372400 Chlamydomonas reinhardtii HOM05D001728 ORTHO05D004321 5.4e-12 75.1 110 43.6
TPR.G11433 Trifolium pratense HOM05D001728 ORTHO05D004321 2.7e-11 72.8 55 67.3
Nn6g35743 Nelumbo nucifera HOM05D001728 ORTHO05D004321 1.3e-10 70.5 39 94.9
TAR627G0048 Trochodendron aralioides HOM05D001728 ORTHO05D004321 8.7e-10 67.8 40 85.0
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 2.1e-08 63.2 62 56.5
CBR_g29935 Chara braunii HOM05D001728 ORTHO05D004321 4.8e-08 62.0 56 55.4
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 7.6e-06 54.7 30 86.7
CDE06G1983 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 7.6e-06 54.7 40 65.0
TAR633G1418 Trochodendron aralioides HOM05D002437 ORTHO05D002831 7.6e-06 54.7 31 87.1


User provided reference genes

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